Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_A24
(317 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0770 + 19420249-19420359,19421691-19421763,19421887-194219... 29 0.79
02_01_0335 + 2386902-2386906,2386976-2387282,2387664-2387777,239... 29 0.79
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798... 29 1.0
02_01_0135 + 967172-967229,968316-968657,968936-969015,969063-96... 28 1.8
09_04_0389 + 17239182-17239316,17240246-17240878 27 3.2
11_05_0097 - 19036044-19036358,19036502-19036585,19036772-190376... 27 4.2
03_05_0136 + 21158917-21159939,21160183-21160241,21160259-211602... 27 4.2
01_01_1125 - 8920590-8924372 27 4.2
02_02_0565 + 11550071-11550909,11551603-11553133,11553205-11553537 26 5.6
10_01_0207 - 2219247-2219902,2220203-2221156,2223739-2224897 26 7.4
08_01_0811 - 7872886-7873261,7873446-7873861,7874253-7874262,787... 26 7.4
01_06_1175 + 35138871-35139009,35139117-35139429,35139791-35140094 26 7.4
11_04_0340 - 16536571-16536705,16536820-16536951,16537265-165381... 25 9.7
11_01_0574 + 4582098-4582331,4582450-4582492,4582683-4582757,458... 25 9.7
10_08_0274 + 16426892-16427101,16427193-16427572,16427655-164279... 25 9.7
05_05_0215 - 23352363-23352666,23353183-23353495,23353590-23353713 25 9.7
04_04_1189 + 31586991-31587291,31587358-31587397,31587449-315875... 25 9.7
>04_03_0770 +
19420249-19420359,19421691-19421763,19421887-19421964,
19422223-19422284,19422404-19422472,19422672-19422700,
19422784-19422991,19423071-19423301,19424079-19424132,
19425344-19426292,19426853-19426863
Length = 624
Score = 29.1 bits (62), Expect = 0.79
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -1
Query: 215 YSSILGGFSSKYECDFKYIKNARRRSFSASEPSMSISIAN 96
YSS G S E F Y N R + F AS SM + +N
Sbjct: 253 YSSYQGNQSDDSELSFDYEINDRDKDFPASRSSMDLDQSN 292
>02_01_0335 +
2386902-2386906,2386976-2387282,2387664-2387777,
2390252-2390320,2390416-2390715,2390829-2390930,
2391085-2391279,2391377-2391664,2391942-2392128,
2393168-2393272,2393778-2393824,2393982-2394074
Length = 603
Score = 29.1 bits (62), Expect = 0.79
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = -2
Query: 169 LNILKTPGDGLSLRLNLRCLFR*PISYGEVSLPHRTICPKMWWTC 35
L +++ + +SL +N++C+ P+S+G +S H +W C
Sbjct: 521 LEVMEVSENPISL-INIQCIKERPVSFGCISYQHTNAICDVWSCC 564
>09_04_0087 + 14476539-14476675,14478876-14479635,14479720-14479871,
14479958-14480024,14480632-14480831,14480915-14481068,
14481585-14481669,14481766-14481857,14482575-14482766,
14482867-14482992,14483072-14483125,14483494-14483550,
14484509-14484606,14484703-14485038,14485116-14485203,
14486891-14487016,14487082-14487138,14488054-14488133,
14488228-14488270,14488948-14489034,14489331-14489420,
14489996-14490054,14490141-14490231,14490330-14490495,
14490662-14490755,14491787-14492909
Length = 1537
Score = 28.7 bits (61), Expect = 1.0
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -2
Query: 178 SAILNILKTPGDGLSLRLNLRCLFR*PISYGEVSLPHRTIC 56
+A+L LK + SLR+ L CL +Y V L H C
Sbjct: 1116 AALLLFLKYANEERSLRVGLLCLLAGKKAYNNVYLRHNVFC 1156
>02_01_0135 +
967172-967229,968316-968657,968936-969015,969063-969698,
969819-971527,971563-972514,972821-973273,974303-974497
Length = 1474
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 70 EEGKPHHTI-LAIEIDIEGSDAEKDRLLAFLIYLKS 174
E KP T LAIE + G D E+D ++ L +KS
Sbjct: 223 EPRKPRQTTSLAIEHKVYGRDTERDNIIELLTKVKS 258
>09_04_0389 + 17239182-17239316,17240246-17240878
Length = 255
Score = 27.1 bits (57), Expect = 3.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 121 LRCLFR*PISYGEVSLPHRTICP 53
+RC + P++YG S PHR P
Sbjct: 61 MRCSLKPPVTYGASSRPHRIAHP 83
>11_05_0097 -
19036044-19036358,19036502-19036585,19036772-19037644,
19038059-19038157
Length = 456
Score = 26.6 bits (56), Expect = 4.2
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Frame = -2
Query: 187 LNTSAILNILKTPGDGLSLRLNLRCLFR*P-----ISYGEVSLPHRTICPKM 47
LN S N+ K +S+R +L+CL +S + SL HR+IC K+
Sbjct: 188 LNLSGFTNLKKLGLHMVSIRGDLQCLLSHCNVLEWLSLTQCSLQHRSICQKL 239
>03_05_0136 +
21158917-21159939,21160183-21160241,21160259-21160294,
21160345-21160387,21160582-21160698,21162090-21162179,
21162329-21162436,21162547-21162588
Length = 505
Score = 26.6 bits (56), Expect = 4.2
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -1
Query: 161 IKNARRRSFSASEPSMSISIANIVW*GFPSSSNHMSEN 48
++ + RRS + S P + SIA +W PSSS+ S N
Sbjct: 34 VRPSARRSPAVSRPDPAPSIARTIW---PSSSSSNSGN 68
>01_01_1125 - 8920590-8924372
Length = 1260
Score = 26.6 bits (56), Expect = 4.2
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = -1
Query: 224 LFNYSSILGGFSSKYECD--FKYIKNARRRSFSASEPSMSISIANIVW*GFPSSSNHMSE 51
L Y+S++GGF + D F ++ + E SI I N+ G+ + + E
Sbjct: 479 LITYTSLIGGFCKRNRLDDAFSIVRKLEQTGVVVDEYVYSILIDNLCKKGYLDRAFSLLE 538
Query: 50 NVVDVQGVSV 21
+D +G+ +
Sbjct: 539 E-MDKKGIKI 547
>02_02_0565 + 11550071-11550909,11551603-11553133,11553205-11553537
Length = 900
Score = 26.2 bits (55), Expect = 5.6
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 121 GSDAEKDRLLAFLIYLKSHSYLDEN 195
G D KDRLL FL+ LK+ L E+
Sbjct: 749 GKDEHKDRLLNFLLRLKTPPLLLES 773
>10_01_0207 - 2219247-2219902,2220203-2221156,2223739-2224897
Length = 922
Score = 25.8 bits (54), Expect = 7.4
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +1
Query: 79 KPHHTILAIEIDIEGSDAEKDRLLAFLIYLKSHSYLDENPPSIE 210
+P+ T L I+ + G +EK RLL FL L+ NPP ++
Sbjct: 544 RPYDTYLYIDNFMFGRHSEKQRLLNFL--------LEYNPPGVQ 579
>08_01_0811 -
7872886-7873261,7873446-7873861,7874253-7874262,
7874370-7875334
Length = 588
Score = 25.8 bits (54), Expect = 7.4
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 94 SYGEVSLPHRTICPKMWWTC 35
SY L H T CP +W+TC
Sbjct: 354 SYKLRLLNHVTACPCLWYTC 373
>01_06_1175 + 35138871-35139009,35139117-35139429,35139791-35140094
Length = 251
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 208 LYSEGFHLNTSAILNILKTPGDGLSLRLNLRC 113
LYS G+ NT+A+ +L G LRC
Sbjct: 55 LYSTGYGTNTAALSTVLFNDGAACGSCYELRC 86
>11_04_0340 -
16536571-16536705,16536820-16536951,16537265-16538106,
16538480-16538940,16539032-16540314,16540423-16541627,
16541857-16542157
Length = 1452
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +1
Query: 91 TILAIEIDIEGSDAEKDRLLAFLI 162
T + IE+ + G DA++DR++ L+
Sbjct: 214 TSVPIELKVYGRDADRDRIIEILL 237
>11_01_0574 + 4582098-4582331,4582450-4582492,4582683-4582757,
4584344-4584465,4584547-4584654,4585975-4586119,
4586786-4586869,4586997-4587345,4587527-4587666,
4587784-4588037,4588409-4588576,4588686-4588976,
4589329-4589538,4589778-4589860,4590288-4590414,
4593624-4595516,4596274-4596395,4596487-4596628,
4596719-4596940,4597489-4597563,4598351-4598452,
4598616-4598819
Length = 1730
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -2
Query: 199 EGFHLNTSAILNILKTPGDGLSLRLNLRC-LFR 104
EGF + A+++ T G ++LR+ LRC +FR
Sbjct: 1532 EGFRQDLRAVIHGNNTLGVYITLRMRLRCEIFR 1564
>10_08_0274 +
16426892-16427101,16427193-16427572,16427655-16427927,
16428315-16428390,16428476-16428655
Length = 372
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 215 YSSILGGFSSKYECDFK 165
YS ILGG+ YE D++
Sbjct: 69 YSEILGGYIQSYELDYQ 85
>05_05_0215 - 23352363-23352666,23353183-23353495,23353590-23353713
Length = 246
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 208 LYSEGFHLNTSAILNILKTPGDGLSLRLNLRC 113
LYS+G+ NT+A+ L G LRC
Sbjct: 50 LYSQGYGTNTAALSTALFNDGAACGSCYELRC 81
>04_04_1189 +
31586991-31587291,31587358-31587397,31587449-31587534,
31587535-31588097,31588250-31589913,31589956-31590066,
31590152-31591181,31591234-31591406,31591535-31591814,
31592275-31592331
Length = 1434
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 91 TILAIEIDIEGSDAEKDRLLAFLI 162
T + IE + G DA+KDR++ LI
Sbjct: 256 TSVPIEPKVYGRDADKDRIIEMLI 279
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,739,346
Number of Sequences: 37544
Number of extensions: 133153
Number of successful extensions: 324
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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