Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_A24
         (317 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC069020-1|AAH69020.1|  480|Homo sapiens IGHG1 protein protein.        29   4.0  
BC043183-1|AAH43183.1| 1284|Homo sapiens collagen, type XX, alph...    27   9.1  
BC041767-1|AAH41767.1|  637|Homo sapiens COL20A1 protein protein.      27   9.1  
AB040943-1|BAA96034.1| 1140|Homo sapiens KIAA1510 protein protein.     27   9.1  

>BC069020-1|AAH69020.1|  480|Homo sapiens IGHG1 protein protein.
          Length = 480

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -2

Query: 202 SEGFHLNTSAILNILKTPGDGL 137
           + GF LNTSA+  + +TPG GL
Sbjct: 43  ASGFSLNTSAMAWVRQTPGQGL 64


>BC043183-1|AAH43183.1| 1284|Homo sapiens collagen, type XX, alpha 1
           protein.
          Length = 1284

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +1

Query: 10  PRALTLTPCTSTTFSDIWFDEEGKPHHTILAIEIDIEGSDAEKD 141
           PRALTL   T  T    W    G  H+ +       +G + E++
Sbjct: 470 PRALTLAAVTPRTVHLTWQPSAGATHYLVRCSPASPKGEEEERE 513


>BC041767-1|AAH41767.1|  637|Homo sapiens COL20A1 protein protein.
          Length = 637

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +1

Query: 10  PRALTLTPCTSTTFSDIWFDEEGKPHHTILAIEIDIEGSDAEKD 141
           PRALTL   T  T    W    G  H+ +       +G + E++
Sbjct: 471 PRALTLAAVTPRTVHLTWQPSAGATHYLVRCSPASPKGEEEERE 514


>AB040943-1|BAA96034.1| 1140|Homo sapiens KIAA1510 protein protein.
          Length = 1140

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +1

Query: 10  PRALTLTPCTSTTFSDIWFDEEGKPHHTILAIEIDIEGSDAEKD 141
           PRALTL   T  T    W    G  H+ +       +G + E++
Sbjct: 320 PRALTLAAVTPRTVHLTWQPSAGATHYLVRCSPASPKGEEEERE 363


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,851,392
Number of Sequences: 237096
Number of extensions: 786589
Number of successful extensions: 5269
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5269
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1511340428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)