Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_A24
         (317 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37092-9|CAA85458.1|  126|Caenorhabditis elegans Hypothetical pr...    29   0.96 
Z82276-1|CAB05238.1|  319|Caenorhabditis elegans Hypothetical pr...    28   1.7  
U10401-1|AAA19058.1|  131|Caenorhabditis elegans Hypothetical pr...    27   2.9  
Z81137-10|CAB03470.2|  232|Caenorhabditis elegans Hypothetical p...    26   5.1  
AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain, ...    25   8.9  
AF003389-3|AAC71136.1| 1003|Caenorhabditis elegans Hypothetical ...    25   8.9  
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical...    25   8.9  

>Z37092-9|CAA85458.1|  126|Caenorhabditis elegans Hypothetical
           protein F44F4.9 protein.
          Length = 126

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = -1

Query: 272 IQDNLVVPSIYKINFVLFNYSSILGGFSSKYECDFKYIKNARRRSFSASEPSMSI 108
           ++D L + ++Y     +F  S+++ G S      + ++KN R R F  SEP + I
Sbjct: 26  VKDTLAMFTLYS-TLAIFVISTVIFGLSL-----YSFLKNRRLRQFKLSEPQVHI 74


>Z82276-1|CAB05238.1|  319|Caenorhabditis elegans Hypothetical
           protein K03D3.1 protein.
          Length = 319

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 274 TYKTTLLCPLFIKLILFYLITL-LYSEGFHLNT 179
           +YK  L+C L   + + ++ TL L +E FHL T
Sbjct: 90  SYKNGLICALCFAIAVVFIFTLYLLTEAFHLIT 122


>U10401-1|AAA19058.1|  131|Caenorhabditis elegans Hypothetical
           protein T20B12.5 protein.
          Length = 131

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 224 LFNYSSILGGFSSKYECDFKYIKN 153
           LF+  +I      KYEC FKY  N
Sbjct: 85  LFHAQNIFNSKLEKYECTFKYYSN 108


>Z81137-10|CAB03470.2|  232|Caenorhabditis elegans Hypothetical
           protein W02D9.2 protein.
          Length = 232

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 283 LIDTYKTTLLCPLFIKLILFYLITLLYSEGFHLNTSAILNIL 158
           L+  +   +LC LF+  I F L  L+ S GF  +T A +  L
Sbjct: 160 LLPPFVAAVLCSLFLHGIAFPLRLLITSIGFVWSTYASMGFL 201


>AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain,
           unconventional myosinprotein 7 protein.
          Length = 1887

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +1

Query: 115 IEGSDAEKDRLLAFLIYLKSHSYLDENPPSIEE*LNK 225
           +EG+D E++R   FL+    + YL++N P   E +N+
Sbjct: 365 LEGAD-EEERKKYFLLKPHDYKYLNQNEPFALEGVNE 400


>AF003389-3|AAC71136.1| 1003|Caenorhabditis elegans Hypothetical
           protein F23H11.4a protein.
          Length = 1003

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 191 SSKYECDFKYIKNARRRSFSASEPSMSISIANIVW 87
           S + E   + + +A ++SF+A +PS    +A  VW
Sbjct: 766 SIEEELSRQMVNDAEKKSFNAKKPSPDFIVAIHVW 800


>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
           protein Y47G6A.29 protein.
          Length = 2460

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 144 TVFLCV*TFDVYFDSQYRMVRFPFLIEPYVR 52
           T+FL   TF V F S+   + F F+I+ Y+R
Sbjct: 30  TLFLAWSTFVVLFFSRVSALFFTFVIDKYLR 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,801,761
Number of Sequences: 27780
Number of extensions: 125140
Number of successful extensions: 347
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)