Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_A23
         (355 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom...    33   0.017
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    30   0.12 
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   2.6  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    25   2.6  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    25   3.4  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    24   6.0  
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    24   6.0  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    24   7.9  
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p...    24   7.9  
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces...    24   7.9  
SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc...    24   7.9  
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    24   7.9  

>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 32.7 bits (71), Expect = 0.017
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +3

Query: 48  TPARNGLVERFHRQ-LTAAIMCHSDQNWYEVIPLILLGIRNAWKDHIGSSSAELVYGETL 224
           TPA+  L +   RQ LT  ++C  +   Y++  ++LL +   WK    +S A ++   T 
Sbjct: 111 TPAQAFLSQPIIRQYLTLLLICLVETTVYQISVVLLLCLTMGWKSWTSASGAVILSSSTR 170

Query: 225 KLP 233
            LP
Sbjct: 171 MLP 173


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 29.9 bits (64), Expect = 0.12
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = +3

Query: 111 HSDQNWYEVIPLILLGI---RNAWKDHIGSSSAELVYGETLKLPSDFF--LASSVAEVTD 275
           H +    EVIP+I++GI   RN+  D     SA+     TL  PSD    L +S  + T 
Sbjct: 341 HRNHEGQEVIPIIIVGIRSLRNSGSDEDDQPSAD---SPTLMHPSDLISSLVNSQNQTTS 397

Query: 276 YSD 284
            SD
Sbjct: 398 VSD 400


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = +3

Query: 135 VIPLILLGIRNAWKDHIGSSSAELVYGETLKLPSDFFLASSVAEVTDYSDFLSRLRRYMC 314
           VIPL  +   N W D+    S  L Y  T  L +DF           ++DF++  +RY+ 
Sbjct: 417 VIPLDNI-FCNIWSDNADYIS--LSYSGTGALKTDFTRTGIRTRKGAFNDFVNSAKRYIL 473

Query: 315 N 317
           N
Sbjct: 474 N 474


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 20/76 (26%), Positives = 31/76 (40%)
 Frame = +3

Query: 96  AAIMCHSDQNWYEVIPLILLGIRNAWKDHIGSSSAELVYGETLKLPSDFFLASSVAEVTD 275
           A ++   D+N    IPL  +     +  +    S      E L +P D  +  SVAEV  
Sbjct: 23  AELLSSKDENLQPSIPLSPVAFELDFSGNFQFISDNS--SELLDIPKDKIIGHSVAEVLG 80

Query: 276 YSDFLSRLRRYMCNLK 323
              + + +R   C LK
Sbjct: 81  TDGYNAFMRAVNCLLK 96


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = +3

Query: 159 IRNAWKDHIGSSSAELV--YGETLKLPS 236
           +RN WKD++ ++S E++  +G   K PS
Sbjct: 365 MRNDWKDYLDNNSKEILDQFGFLQKRPS 392


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
 Frame = +3

Query: 57  RNGLVERFHRQLTAAIMCHSDQNWYEVIPLILLGIRNAWK-DHIGSSS--AELVYGETLK 227
           RNGL+   H+     ++  S       +PL    +  A +  H+ S     EL +   + 
Sbjct: 575 RNGLINS-HKSFVLTVLSSS-------VPLFQTDVSGACELVHLASEGLDGELDFINVIC 626

Query: 228 LPSDFFLASSVAEVTDYSDFLSRLR 302
              D+FL+ SV E  DY   +S LR
Sbjct: 627 DLLDYFLSLSVIEDADYQICVSSLR 651


>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 312 TCSGADVIRSHCNQ 271
           TC G  ++ SHCN+
Sbjct: 101 TCPGLSIVYSHCNR 114


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 228 LPSDFFLASSVAEVTDYSDFLSRLRRY 308
           LP D F+   + EV     F  R+R+Y
Sbjct: 200 LPKDTFVYEYIGEVIPEQKFRKRMRQY 226


>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 612

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +2

Query: 146 NTSWDKKRLERSYRKFLSRACIWRNFKAP*RFFPCVIG 259
           N SW    L      FL R  + R +  P R F  +IG
Sbjct: 307 NESWQCFWLNEGMTVFLERKILGRLYGEPTRQFEAIIG 344


>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 408

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 120 QNWYEVIPLILLGIRNAWKD 179
           Q  Y +IP I+  IRN+W D
Sbjct: 294 QTIYPLIPGIIEFIRNSWSD 313


>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 271 VTSATDDARKKSLGSFKVSPYTSSAEEL 188
           + + T + R K  G+FK+  YT   + L
Sbjct: 233 IYTRTSEPRPKPAGTFKIHAYTEGGKPL 260


>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 255 SVAEVTDYSDFLSRLRRYMCNLKPTTVIRHGKS 353
           ++  V D S   S+  +Y+CN  P  +   GK+
Sbjct: 471 NICIVGDPSTSKSQFLKYVCNFLPRAIYTSGKA 503


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,526,355
Number of Sequences: 5004
Number of extensions: 29957
Number of successful extensions: 88
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)