Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_A23
(355 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420... 33 0.049
11_04_0032 + 12545208-12545954 33 0.065
08_02_0135 - 13027496-13027933 33 0.065
06_03_0223 - 18391177-18391287,18391570-18392081,18392200-183930... 33 0.065
07_03_0180 + 14804784-14805231,14806855-14806892,14807135-14807143 33 0.085
01_05_0044 + 17531005-17531739,17532624-17532956,17532968-17533027 33 0.085
09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539 32 0.11
04_04_1405 - 33305948-33309676,33309749-33310468,33310533-333114... 32 0.11
03_05_0310 + 23008915-23009841,23010401-23011162 32 0.15
06_02_0306 + 14115751-14116450,14116882-14117691,14118957-14119141 29 0.79
04_03_0027 + 9667508-9668800 29 0.79
02_03_0058 + 14536336-14536593,14536715-14536984 29 0.79
03_05_0943 + 29034398-29034512,29035059-29035508,29035654-29035826 28 1.8
08_02_0360 + 16196712-16197560,16198126-16198875 28 2.4
05_03_0344 - 12744727-12744837,12745116-12745574 28 2.4
02_05_0739 + 31401372-31402371,31402667-31402719 28 2.4
11_04_0146 - 14091671-14092357,14092996-14093229 27 3.2
08_01_0162 - 1302497-1302787,1304608-1305271,1305380-1306927,130... 27 3.2
06_03_1251 + 28749558-28749818,28749953-28750146,28750269-28750695 27 3.2
07_01_0279 + 2055310-2055541,2055916-2056235,2056734-2057213 27 4.2
03_01_0330 + 2566662-2566740,2566821-2566911,2567003-2567057,256... 27 4.2
02_02_0473 - 10727908-10728052,10728367-10728440,10728660-107288... 27 4.2
05_01_0351 + 2750253-2751042,2751951-2751958,2752122-2752149,275... 27 5.6
04_01_0274 + 3638409-3639332 27 5.6
04_03_0451 - 16035346-16035361,16035463-16035617,16035784-160358... 26 7.4
01_06_1685 + 39170428-39171735 26 7.4
07_03_0684 + 20675947-20676157,20676236-20676336,20676428-206766... 26 9.8
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622... 26 9.8
01_05_0015 - 17164024-17164193,17164308-17164713 26 9.8
>04_01_0312 +
4206400-4206627,4206661-4207269,4207425-4207902,
4208006-4208297,4209278-4209569,4210013-4210465
Length = 783
Score = 33.5 bits (73), Expect = 0.049
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = +3
Query: 51 PARNGLVERFHRQLT---AAIMCHSDQNWYEVIPLILLGIRNAWKDHIGSSSAELVYGET 221
P +G E ++Q+ I+ W + +P L R A+K IG S ++VYG++
Sbjct: 697 PQTSGQAETSNKQIKNILQKIVNKMGTGWKDRLPDTLWAYRTAYKTPIGMSPYQIVYGKS 756
Query: 222 LKLP 233
+LP
Sbjct: 757 YRLP 760
>11_04_0032 + 12545208-12545954
Length = 248
Score = 33.1 bits (72), Expect = 0.065
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = +3
Query: 51 PARNGLVERFHRQLTAAIMCHSDQ---NWYEVIPLILLGIRNAWKDHIGSSSAELVYGET 221
P +G E ++Q+ + D+ +W +P L R A+K IG S +LVY +T
Sbjct: 34 PQTSGQAETSNKQIKNILQKTVDEMGKSWKNKLPDALWAYRTAYKTPIGMSPYQLVYRKT 93
Query: 222 LKLP 233
LP
Sbjct: 94 CHLP 97
>08_02_0135 - 13027496-13027933
Length = 145
Score = 33.1 bits (72), Expect = 0.065
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +3
Query: 117 DQNWYEVIPLILLGIRNAWKDHIGSSSAELVYGETLKLP 233
++ W + +P L R A K IG + ++VYG+T +LP
Sbjct: 84 EEGWKDKLPDALWAYRTAHKTPIGMTPYQIVYGKTCQLP 122
>06_03_0223 -
18391177-18391287,18391570-18392081,18392200-18393019,
18393603-18393671,18393973-18394062,18395381-18395575
Length = 598
Score = 33.1 bits (72), Expect = 0.065
Identities = 21/69 (30%), Positives = 29/69 (42%)
Frame = +3
Query: 27 IFLPRLTTPARNGLVERFHRQLTAAIMCHSDQNWYEVIPLILLGIRNAWKDHIGSSSAEL 206
I PR TP ++ L + + W +P L R A+K IG S +L
Sbjct: 381 IIFPRFGTPLDETSNKQIKNILQKTVN-EMGKAWKNKLPDALWAYRTAYKTPIGMSPYQL 439
Query: 207 VYGETLKLP 233
VYG+T P
Sbjct: 440 VYGKTCHFP 448
>07_03_0180 + 14804784-14805231,14806855-14806892,14807135-14807143
Length = 164
Score = 32.7 bits (71), Expect = 0.085
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +3
Query: 126 WYEVIPLILLGIRNAWKDHIGSSSAELVYGETLKLP 233
W +P L R A+K IG S +LVYG+T LP
Sbjct: 5 WKNKLPDALWAYRTAYKMPIGMSPYQLVYGKTCHLP 40
>01_05_0044 + 17531005-17531739,17532624-17532956,17532968-17533027
Length = 375
Score = 32.7 bits (71), Expect = 0.085
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 126 WYEVIPLILLGIRNAWKDHIGSSSAELVYGETLKLP 233
W + +P L R A+K IG S ++VYG++ +LP
Sbjct: 96 WKDRLPDALWAYRTAYKTPIGMSPYQIVYGKSCRLP 131
>09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539
Length = 1908
Score = 32.3 bits (70), Expect = 0.11
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Frame = +3
Query: 51 PARNGLVERFHRQL-------TAAIMCHSDQNWYEVIPLILLGIRNAWKDHIGSSSAELV 209
P NG VER + ++ T I+ +W E +P +L R G + LV
Sbjct: 1713 PRSNGQVERANAEIFKGLKTKTFNILKKHGDSWIEELPAVLWANRTIPSRATGETPFFLV 1772
Query: 210 YGETLKLPSDFFLASSVAEVTDYSDFLSRLRR 305
YG LPS+ L S A + +D ++LRR
Sbjct: 1773 YGAEAVLPSELTLRSPRATMYCEAD-QNQLRR 1803
>04_04_1405 - 33305948-33309676,33309749-33310468,33310533-33311439,
33334405-33334484
Length = 1811
Score = 32.3 bits (70), Expect = 0.11
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Frame = +3
Query: 51 PARNGLVERFHRQL-------TAAIMCHSDQNWYEVIPLILLGIRNAWKDHIGSSSAELV 209
P NG VER + ++ T I+ +W E +P +L R G + LV
Sbjct: 1622 PRSNGQVERANAEILKGLKTKTFNILKKHGDSWIEELPAVLWANRTTPSRATGETPFFLV 1681
Query: 210 YGETLKLPSDFFLASSVAEVTDYSDFLSRLRR 305
YG LPS+ L S A + +D +LRR
Sbjct: 1682 YGAEAVLPSELTLRSPRATMYCEAD-QDQLRR 1712
>03_05_0310 + 23008915-23009841,23010401-23011162
Length = 562
Score = 31.9 bits (69), Expect = 0.15
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 126 WYEVIPLILLGIRNAWKDHIGSSSAELVYGETLKLP 233
W + +P L R A+K IG S ++VYG+ +LP
Sbjct: 160 WKDRLPDALWAYRTAYKTPIGMSPYQIVYGKPCRLP 195
>06_02_0306 + 14115751-14116450,14116882-14117691,14118957-14119141
Length = 564
Score = 29.5 bits (63), Expect = 0.79
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 126 WYEVIPLILLGIRNAWKDHIGSSSAELVYGETLKLP 233
W E + L R +K IG S ++VYG++ +LP
Sbjct: 89 WKEKLSDALWAYRTTYKTPIGMSPYQIVYGKSCRLP 124
>04_03_0027 + 9667508-9668800
Length = 430
Score = 29.5 bits (63), Expect = 0.79
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 126 WYEVIPLILLGIRNAWKDHIGSSSAELVYGETLKLP 233
W +P L R + IG S +LVYG+T LP
Sbjct: 382 WKNKLPNALWAYRTTYNMPIGMSPYQLVYGKTCHLP 417
>02_03_0058 + 14536336-14536593,14536715-14536984
Length = 175
Score = 29.5 bits (63), Expect = 0.79
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 126 WYEVIPLILLGIRNAWKDHIGSSSAELVYGETLKLP 233
W + +P L R A+K IG +VYG++ +LP
Sbjct: 113 WKDRLPDALWAYRTAYKTPIGMFRYHIVYGKSCRLP 148
>03_05_0943 + 29034398-29034512,29035059-29035508,29035654-29035826
Length = 245
Score = 28.3 bits (60), Expect = 1.8
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Frame = -1
Query: 217 SPYTSSAEELPI*SFQAF-----LIPRSINGMTSYQF*SE*HIIAAVSCRWKRSTSPLRA 53
SP+T EEL + S +A +I R G T + H+I A CR + S R
Sbjct: 57 SPFTEEEEELLLASHRAHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRERMRLSNRRG 116
Query: 52 GVVSRG 35
G + G
Sbjct: 117 GAAAAG 122
>08_02_0360 + 16196712-16197560,16198126-16198875
Length = 532
Score = 27.9 bits (59), Expect = 2.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 126 WYEVIPLILLGIRNAWKDHIGSSSAELVYGETLKLP 233
W + + L R +K IG S ++VYG++ +LP
Sbjct: 134 WKDRLSDALWAYRTVYKTPIGMSPYQIVYGKSYRLP 169
>05_03_0344 - 12744727-12744837,12745116-12745574
Length = 189
Score = 27.9 bits (59), Expect = 2.4
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 126 WYEVIPLILLGIRNAWKDHIGSSSAELVYGETLKLP 233
W + L R A+K IG S +LVYG+T P
Sbjct: 5 WKNKLLDALWAYRTAYKTPIGMSPYQLVYGKTCHFP 40
>02_05_0739 + 31401372-31402371,31402667-31402719
Length = 350
Score = 27.9 bits (59), Expect = 2.4
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Frame = +3
Query: 51 PARNGLVERFHRQLTAAIMCHSDQN----WYEVIPLILLGIRNAWKDHIGSSSAELVYGE 218
P NG VER + ++ AI + + W E + +L +R G + LVYG+
Sbjct: 167 PQTNGAVERANGKIMEAIKKRLEGSAKGKWPEDLLSVLWALRTTVVRSTGMTPFRLVYGD 226
Query: 219 TLKLPSD 239
PS+
Sbjct: 227 EAMTPSE 233
>11_04_0146 - 14091671-14092357,14092996-14093229
Length = 306
Score = 27.5 bits (58), Expect = 3.2
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 126 WYEVIPLILLGIRNAWKDHIGSSSAELVYGETLKL 230
W + L R A+K IG S +LVYG+T L
Sbjct: 187 WKNKLSDALWAYRTAYKTPIGMSPYQLVYGKTCHL 221
>08_01_0162 -
1302497-1302787,1304608-1305271,1305380-1306927,
1307360-1308768
Length = 1303
Score = 27.5 bits (58), Expect = 3.2
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 165 NAWKDHIGSSSAELVYGETLKLPSDFFLASSVAEVTDYSDFLSRL 299
+A DH+G +V +TL LPS F L ++ V +Y + S L
Sbjct: 178 DATYDHLGIDVNSVVSNKTLTLPS-FTLVGNMTAVVEYDNVSSIL 221
Score = 25.8 bits (54), Expect = 9.8
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +3
Query: 165 NAWKDHIGSSSAELVYGETLKLPSDFFLASSVAEVTDYSDFLSRL 299
+A DH+G +V TL LPS F L ++ V +Y + S L
Sbjct: 680 DATYDHLGVDVNSVVSKTTLTLPS-FTLVGNMTAVVEYDNVSSIL 723
>06_03_1251 + 28749558-28749818,28749953-28750146,28750269-28750695
Length = 293
Score = 27.5 bits (58), Expect = 3.2
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +2
Query: 143 INTSWDKKRLERSYRKFLSRACIWRN 220
+ W K S+R F + AC+W N
Sbjct: 198 VKADWSKAPFVASFRDFNADACVWSN 223
>07_01_0279 + 2055310-2055541,2055916-2056235,2056734-2057213
Length = 343
Score = 27.1 bits (57), Expect = 4.2
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 231 PSDFFLASSVAEVTDYSDFLSRLRRYMCNLKPTTVIRHG 347
PSDF S+V ++ F R R+Y +++P V G
Sbjct: 73 PSDFLKTSTVGSEKEWYFFCLRGRKYRNSIRPNRVTGSG 111
>03_01_0330 + 2566662-2566740,2566821-2566911,2567003-2567057,
2567166-2567297,2567517-2567567,2567769-2567840,
2568590-2568680,2568988-2569066,2569147-2569210,
2569917-2570020,2570182-2570287,2572080-2572157,
2572649-2572801,2573039-2573128,2573284-2573349,
2573485-2573583,2573660-2573734,2574455-2574514,
2574909-2574998,2575202-2575323,2575462-2575591,
2575662-2575741,2576167-2576302,2577005-2577086,
2578475-2578620,2578796-2578876,2578994-2579094,
2579770-2580008,2580100-2580209,2580518-2580646,
2580728-2580802,2581455-2581586,2582298-2582470,
2582566-2582688,2582771-2582831,2582910-2583005,
2583251-2583351,2584014-2584119,2584673-2584786,
2584888-2584962,2585619-2585711,2585883-2585954,
2586253-2586338,2586434-2586527,2586596-2586703,
2586782-2587021
Length = 1579
Score = 27.1 bits (57), Expect = 4.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 270 TDYSDFLSRLRRYMCNLKPTTV 335
+DY DF+ L R +C L P V
Sbjct: 1434 SDYEDFIRDLTRQLCRLSPARV 1455
>02_02_0473 -
10727908-10728052,10728367-10728440,10728660-10728818,
10729606-10729774,10730216-10730355,10730469-10730879,
10731055-10731334,10731508-10731571,10731995-10733281,
10733363-10733822,10733988-10734356
Length = 1185
Score = 27.1 bits (57), Expect = 4.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 143 WNDFIPVLIGVTHNCCCQLPMETFHKSVT 57
WND+ V I H C Q +E +H+++T
Sbjct: 126 WNDYWKVSIVTKHQCYLQ-GVEKYHRNIT 153
>05_01_0351 +
2750253-2751042,2751951-2751958,2752122-2752149,
2754692-2754775,2755780-2757548
Length = 892
Score = 26.6 bits (56), Expect = 5.6
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +3
Query: 36 PRLTTPARNGLVERFHRQLTAAIMCHSDQNWYEVIPLILLGIRNAWKDHI 185
P + TP+ L+ +F + T + + PL + GIR WK H+
Sbjct: 496 PAIKTPSPTALMMKFPPKTTLPSVASLKARFARFGPLDVDGIRVYWKSHM 545
>04_01_0274 + 3638409-3639332
Length = 307
Score = 26.6 bits (56), Expect = 5.6
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 137 HSINTSWDKKRLERSYRKFLSRACIWRNFK 226
H+ T+ DKKRLE + R R+ ++++F+
Sbjct: 258 HTSGTATDKKRLENTGRNSEQRSRVFQSFR 287
>04_03_0451 -
16035346-16035361,16035463-16035617,16035784-16035891,
16036277-16036336,16036444-16036519,16037189-16037220
Length = 148
Score = 26.2 bits (55), Expect = 7.4
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 239 IAREL*SFSIYKLC*GTSYMIFPGVSYPKK 150
+A+++ FS+ K C G+ Y + P V PK+
Sbjct: 33 LAKQINKFSMLKSCEGSVYWMAPEVVNPKR 62
>01_06_1685 + 39170428-39171735
Length = 435
Score = 26.2 bits (55), Expect = 7.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 222 LKLPSDFFLASSVAEVTDYSDFLSRLR 302
++LP DFF +A V D + ++S LR
Sbjct: 355 VELPLDFFKVGDLASVHDLATYISLLR 381
>07_03_0684 +
20675947-20676157,20676236-20676336,20676428-20676630,
20677024-20677438
Length = 309
Score = 25.8 bits (54), Expect = 9.8
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +2
Query: 149 TSWDKKRLERSYRKFLSRACIW 214
T W K SYR F + AC W
Sbjct: 220 TDWTKAPFISSYRDFTADACSW 241
>03_05_1065 +
30061588-30061883,30061995-30062056,30062196-30062276,
30062391-30062464,30062547-30062629,30063044-30063147,
30063526-30063665,30063736-30063783,30063939-30063991,
30064178-30064262,30064346-30064412,30064496-30064606,
30065262-30065283,30066244-30071110,30071186-30071374,
30071463-30071577,30072329-30073388,30074247-30074694,
30074966-30075019,30075105-30076898,30076989-30077949,
30078271-30078384,30078459-30078613,30078934-30079026,
30079341-30079613,30093423-30093975,30094465-30094540,
30094619-30094718
Length = 4025
Score = 25.8 bits (54), Expect = 9.8
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 216 ETLKLPSDFFLASSVAEVTDYSDFLSRLRRYMCNLKPTTV 335
+ L L + AS+V + D+S FLSRLR + + T V
Sbjct: 698 QVLSLQNLGLRASAVEALLDFSSFLSRLRLHPNHTMVTNV 737
>01_05_0015 - 17164024-17164193,17164308-17164713
Length = 191
Score = 25.8 bits (54), Expect = 9.8
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 165 NAWKDHIGSSSAELVYGETLKLP 233
+A+K IG S ++VYG++ +LP
Sbjct: 135 SAYKPPIGMSPYQIVYGKSCRLP 157
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,511,914
Number of Sequences: 37544
Number of extensions: 175640
Number of successful extensions: 413
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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