Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_A23
         (355 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X98296-1|CAA66942.1| 2547|Homo sapiens ubiquitin hydrolase protein.    32   0.58 
BC050529-1|AAH50529.1| 1050|Homo sapiens ankyrin repeat domain 2...    30   1.8  
AL834335-1|CAD39003.1|  407|Homo sapiens hypothetical protein pr...    30   1.8  
AK054561-1|BAB70755.1| 1060|Homo sapiens FLJ00040 protein protein.     30   1.8  
BC119719-1|AAI19720.1|  637|Homo sapiens chromosome 19 open read...    29   3.1  
BC012945-1|AAH12945.2|  546|Homo sapiens C19orf57 protein protein.     29   3.1  
BC002891-1|AAH02891.2|  396|Homo sapiens C19orf57 protein protein.     29   3.1  
AK097431-1|BAC05049.1|  637|Homo sapiens protein ( Homo sapiens ...    29   3.1  
BC095419-1|AAH95419.1|  946|Homo sapiens sorting nexin 14 protein.     28   7.2  
BC068589-1|AAH68589.1|  946|Homo sapiens sorting nexin 14 protein.     28   7.2  
BC046520-1|AAH46520.1|  901|Homo sapiens SNX14 protein protein.        28   7.2  
AL589666-1|CAI40163.1|  939|Homo sapiens RP11-321N4.2 protein.         28   7.2  
AL136082-1|CAI20445.1|  939|Homo sapiens RP11-321N4.2 protein.         28   7.2  
Z15115-1|CAA78821.1| 1031|Homo sapiens DNA  topoisomerase II pro...    28   9.5  
X68060-1|CAA48197.1| 1621|Homo sapiens DNA topoisomerase II prot...    28   9.5  
U54831-1|AAB01982.1|  350|Homo sapiens topoisomerase IIb protein.      28   9.5  
BC021863-1|AAH21863.1|  485|Homo sapiens Unknown (protein for IM...    28   9.5  
AJ011721-1|CAA09753.1|  717|Homo sapiens topoisomerase II beta p...    28   9.5  
AF087160-1|AAC77432.1| 1598|Homo sapiens DNA topoisomerase II be...    28   9.5  
AB208879-1|BAD92116.1| 1009|Homo sapiens DNA topoisomerase II, b...    28   9.5  

>X98296-1|CAA66942.1| 2547|Homo sapiens ubiquitin hydrolase protein.
          Length = 2547

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
 Frame = +3

Query: 24  VIFLPRLTTPARNGLVERFHRQLTAAIMCHSDQNWYEVIPLILLGIRNAWKDHI--GSSS 197
           + F   LT  A +G     HR L    +    Q+W+ ++ L+ + +    K HI  G+  
Sbjct: 126 ISFTKILTDEAVSGWKFEIHRCLVELCVAKLSQDWFPLLELLAMALNPHCKFHIYNGTRP 185

Query: 198 AELVYGETLKLPSDFFLASS 257
            E V   +++LP D   A S
Sbjct: 186 CESV-SSSVQLPEDELFARS 204


>BC050529-1|AAH50529.1| 1050|Homo sapiens ankyrin repeat domain 27
           (VPS9 domain) protein.
          Length = 1050

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = -2

Query: 102 LLLSVADGNVPQVRYVLEW 46
           LL +VADG++  VRY+LEW
Sbjct: 673 LLRAVADGDLEMVRYLLEW 691


>AL834335-1|CAD39003.1|  407|Homo sapiens hypothetical protein
           protein.
          Length = 407

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = -2

Query: 102 LLLSVADGNVPQVRYVLEW 46
           LL +VADG++  VRY+LEW
Sbjct: 30  LLRAVADGDLEMVRYLLEW 48


>AK054561-1|BAB70755.1| 1060|Homo sapiens FLJ00040 protein protein.
          Length = 1060

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = -2

Query: 102 LLLSVADGNVPQVRYVLEW 46
           LL +VADG++  VRY+LEW
Sbjct: 683 LLRAVADGDLEMVRYLLEW 701


>BC119719-1|AAI19720.1|  637|Homo sapiens chromosome 19 open reading
           frame 57 protein.
          Length = 637

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 174 KDHIGSSSAELVYGETLKLPSDFFLASSVAEVTDYSDF 287
           +DH+  S+ +  + ++L +  DF L S + +  D SDF
Sbjct: 513 RDHLPHSADQGTWADSLAVELDFLLDSQIQDALDASDF 550


>BC012945-1|AAH12945.2|  546|Homo sapiens C19orf57 protein protein.
          Length = 546

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 174 KDHIGSSSAELVYGETLKLPSDFFLASSVAEVTDYSDF 287
           +DH+  S+ +  + ++L +  DF L S + +  D SDF
Sbjct: 391 RDHLPHSADQGTWADSLAVELDFLLDSQIQDALDASDF 428


>BC002891-1|AAH02891.2|  396|Homo sapiens C19orf57 protein protein.
          Length = 396

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 174 KDHIGSSSAELVYGETLKLPSDFFLASSVAEVTDYSDF 287
           +DH+  S+ +  + ++L +  DF L S + +  D SDF
Sbjct: 241 RDHLPHSADQGTWADSLAVELDFLLDSQIQDALDASDF 278


>AK097431-1|BAC05049.1|  637|Homo sapiens protein ( Homo sapiens
           cDNA FLJ40112 fis, clone TESTI2008394. ).
          Length = 637

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 174 KDHIGSSSAELVYGETLKLPSDFFLASSVAEVTDYSDF 287
           +DH+  S+ +  + ++L +  DF L S + +  D SDF
Sbjct: 513 RDHLPHSADQGTWADSLAVELDFLLDSQIQDALDASDF 550


>BC095419-1|AAH95419.1|  946|Homo sapiens sorting nexin 14 protein.
          Length = 946

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 26/95 (27%), Positives = 39/95 (41%)
 Frame = +3

Query: 18  VPVIFLPRLTTPARNGLVERFHRQLTAAIMCHSDQNWYEVIPLILLGIRNAWKDHIGSSS 197
           +P IF      P + GL E F +  + A+        +   P +LL     W D   SS 
Sbjct: 75  LPNIFFTIKYKPKQLGLQELFPQGHSCAVCGKVKCKRHR--PSLLLENYQPWLDLKISSK 132

Query: 198 AELVYGETLKLPSDFFLASSVAEVTDYSDFLSRLR 302
            +    E L+L  + F+     +VTD   F+  LR
Sbjct: 133 VDASLSEVLELVLENFVYPWYRDVTDDESFVDELR 167


>BC068589-1|AAH68589.1|  946|Homo sapiens sorting nexin 14 protein.
          Length = 946

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 26/95 (27%), Positives = 39/95 (41%)
 Frame = +3

Query: 18  VPVIFLPRLTTPARNGLVERFHRQLTAAIMCHSDQNWYEVIPLILLGIRNAWKDHIGSSS 197
           +P IF      P + GL E F +  + A+        +   P +LL     W D   SS 
Sbjct: 75  LPNIFFTIKYKPKQLGLQELFPQGHSCAVCGKVKCKRHR--PSLLLENYQPWLDLKISSK 132

Query: 198 AELVYGETLKLPSDFFLASSVAEVTDYSDFLSRLR 302
            +    E L+L  + F+     +VTD   F+  LR
Sbjct: 133 VDASLSEVLELVLENFVYPWYRDVTDDESFVDELR 167


>BC046520-1|AAH46520.1|  901|Homo sapiens SNX14 protein protein.
          Length = 901

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 26/95 (27%), Positives = 39/95 (41%)
 Frame = +3

Query: 18  VPVIFLPRLTTPARNGLVERFHRQLTAAIMCHSDQNWYEVIPLILLGIRNAWKDHIGSSS 197
           +P IF      P + GL E F +  + A+        +   P +LL     W D   SS 
Sbjct: 39  LPNIFFTIKYKPKQLGLQELFPQGHSCAVCGKVKCKRHR--PSLLLENYQPWLDLKISSK 96

Query: 198 AELVYGETLKLPSDFFLASSVAEVTDYSDFLSRLR 302
            +    E L+L  + F+     +VTD   F+  LR
Sbjct: 97  VDASLSEVLELVLENFVYPWYRDVTDDESFVDELR 131


>AL589666-1|CAI40163.1|  939|Homo sapiens RP11-321N4.2 protein.
          Length = 939

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 26/95 (27%), Positives = 39/95 (41%)
 Frame = +3

Query: 18  VPVIFLPRLTTPARNGLVERFHRQLTAAIMCHSDQNWYEVIPLILLGIRNAWKDHIGSSS 197
           +P IF      P + GL E F +  + A+        +   P +LL     W D   SS 
Sbjct: 68  LPNIFFTIKYKPKQLGLQELFPQGHSCAVCGKVKCKRHR--PSLLLENYQPWLDLKISSK 125

Query: 198 AELVYGETLKLPSDFFLASSVAEVTDYSDFLSRLR 302
            +    E L+L  + F+     +VTD   F+  LR
Sbjct: 126 VDASLSEVLELVLENFVYPWYRDVTDDESFVDELR 160


>AL136082-1|CAI20445.1|  939|Homo sapiens RP11-321N4.2 protein.
          Length = 939

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 26/95 (27%), Positives = 39/95 (41%)
 Frame = +3

Query: 18  VPVIFLPRLTTPARNGLVERFHRQLTAAIMCHSDQNWYEVIPLILLGIRNAWKDHIGSSS 197
           +P IF      P + GL E F +  + A+        +   P +LL     W D   SS 
Sbjct: 68  LPNIFFTIKYKPKQLGLQELFPQGHSCAVCGKVKCKRHR--PSLLLENYQPWLDLKISSK 125

Query: 198 AELVYGETLKLPSDFFLASSVAEVTDYSDFLSRLR 302
            +    E L+L  + F+     +VTD   F+  LR
Sbjct: 126 VDASLSEVLELVLENFVYPWYRDVTDDESFVDELR 160


>Z15115-1|CAA78821.1| 1031|Homo sapiens DNA  topoisomerase II
           protein.
          Length = 1031

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 162 RNAWKDHIGSSSAELVYGETLKLPSDFFLASSVAEVTDYS-DF 287
           RN W D    S ++L   E + +P D  L  + AE   Y+ DF
Sbjct: 737 RNPWSDDESKSESDLEETEPVVIPRDSLLRRAAAERPKYTFDF 779


>X68060-1|CAA48197.1| 1621|Homo sapiens DNA topoisomerase II protein.
          Length = 1621

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 162  RNAWKDHIGSSSAELVYGETLKLPSDFFLASSVAEVTDYS-DF 287
            RN W D    S ++L   E + +P D  L  + AE   Y+ DF
Sbjct: 1327 RNPWSDDESKSESDLEETEPVVIPRDSLLRRAAAERPKYTFDF 1369


>U54831-1|AAB01982.1|  350|Homo sapiens topoisomerase IIb protein.
          Length = 350

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 162 RNAWKDHIGSSSAELVYGETLKLPSDFFLASSVAEVTDYS-DF 287
           RN W D    S ++L   E + +P D  L  + AE   Y+ DF
Sbjct: 56  RNPWSDDESKSESDLEETEPVVIPRDSLLRRAAAERPKYTFDF 98


>BC021863-1|AAH21863.1|  485|Homo sapiens Unknown (protein for
           IMAGE:4999541) protein.
          Length = 485

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 162 RNAWKDHIGSSSAELVYGETLKLPSDFFLASSVAEVTDYS-DF 287
           RN W D    S ++L   E + +P D  L  + AE   Y+ DF
Sbjct: 191 RNPWSDDESKSESDLEETEPVVIPRDSLLRRAAAERPKYTFDF 233


>AJ011721-1|CAA09753.1|  717|Homo sapiens topoisomerase II beta
           protein.
          Length = 717

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 162 RNAWKDHIGSSSAELVYGETLKLPSDFFLASSVAEVTDYS-DF 287
           RN W D    S ++L   E + +P D  L  + AE   Y+ DF
Sbjct: 423 RNPWSDDESKSESDLEETEPVVIPRDSLLRRAAAERPKYTFDF 465


>AF087160-1|AAC77432.1| 1598|Homo sapiens DNA topoisomerase II beta
            protein.
          Length = 1598

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 162  RNAWKDHIGSSSAELVYGETLKLPSDFFLASSVAEVTDYS-DF 287
            RN W D    S ++L   E + +P D  L  + AE   Y+ DF
Sbjct: 1304 RNPWSDDESKSESDLEETEPVVIPRDSLLRRAAAERPKYTFDF 1346


>AB208879-1|BAD92116.1| 1009|Homo sapiens DNA topoisomerase II, beta
           isozyme variant protein.
          Length = 1009

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 162 RNAWKDHIGSSSAELVYGETLKLPSDFFLASSVAEVTDYS-DF 287
           RN W D    S ++L   E + +P D  L  + AE   Y+ DF
Sbjct: 715 RNPWSDDESKSESDLEETEPVVIPRDSLLRRAAAERPKYTFDF 757


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,258,489
Number of Sequences: 237096
Number of extensions: 964723
Number of successful extensions: 2126
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2126
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2075554296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)