Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_A23
         (355 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93396-5|CAB07714.1|  633|Caenorhabditis elegans Hypothetical pr...    33   0.076
DQ645956-1|ABG36764.1|  624|Caenorhabditis elegans molting prote...    33   0.076
Z81030-13|CAB02705.2|  358|Caenorhabditis elegans Hypothetical p...    31   0.23 
U58760-5|AAK31464.1| 1076|Caenorhabditis elegans Hypothetical pr...    30   0.40 
Z71185-5|CAA94911.1| 1078|Caenorhabditis elegans Hypothetical pr...    29   1.2  
Z68335-5|CAL63990.1|  202|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z68333-5|CAA92724.2|  202|Caenorhabditis elegans Hypothetical pr...    26   8.7  

>Z93396-5|CAB07714.1|  633|Caenorhabditis elegans Hypothetical
           protein ZC15.7 protein.
          Length = 633

 Score = 32.7 bits (71), Expect = 0.076
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +3

Query: 114 SDQNWYEVIPLILL-GIRNAWKDHIGSSSAELVYGETLKLPSDFFLASSVAEVTD 275
           ++Q + E++  +L  G RN+ +DHIG++ A      +++     F  S + EV D
Sbjct: 290 AEQGYPEIVKFLLCNGARNSTRDHIGATPAHYAAQFSVECLKILFAESKITEVND 344


>DQ645956-1|ABG36764.1|  624|Caenorhabditis elegans molting protein
           MLT-4 protein.
          Length = 624

 Score = 32.7 bits (71), Expect = 0.076
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +3

Query: 114 SDQNWYEVIPLILL-GIRNAWKDHIGSSSAELVYGETLKLPSDFFLASSVAEVTD 275
           ++Q + E++  +L  G RN+ +DHIG++ A      +++     F  S + EV D
Sbjct: 290 AEQGYPEIVKFLLCNGARNSTRDHIGATPAHYAAQFSVECLKILFAESKITEVND 344


>Z81030-13|CAB02705.2|  358|Caenorhabditis elegans Hypothetical
           protein C01G10.3 protein.
          Length = 358

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 21/56 (37%), Positives = 30/56 (53%)
 Frame = +3

Query: 102 IMCHSDQNWYEVIPLILLGIRNAWKDHIGSSSAELVYGETLKLPSDFFLASSVAEV 269
           I+C+ ++ W  VI   L  I N+  +HI  S+  L YG TL  P D+F   SV  +
Sbjct: 143 ILCYGNRFW-NVITEHLDRIENS--NHISFSAEHLAYGGTLAAP-DYFFEWSVLSI 194


>U58760-5|AAK31464.1| 1076|Caenorhabditis elegans Hypothetical
           protein C27A2.1 protein.
          Length = 1076

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
 Frame = +3

Query: 129 YEVIPLILLGIRNAWKDHIGSSSAELVYGETL--KLPSDFFLASSVAEVTDYSDFLSRLR 302
           Y+   L++ G +++W+ +     AE +Y E +  +LPS+         V++  D  + L+
Sbjct: 483 YKEDELLINGKQHSWRINTSVVPAEKIYSEDIDAQLPSELSRLGFKYLVSNCFDAPAPLK 542

Query: 303 RYMCNLKPTTVIRHGKS 353
           +++CN+     I  G S
Sbjct: 543 QFLCNVSGLNRIPFGGS 559


>Z71185-5|CAA94911.1| 1078|Caenorhabditis elegans Hypothetical
           protein C35A5.8 protein.
          Length = 1078

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = +3

Query: 138 IPLILLGIRNAWKDHIGSSSAELVYGETLKLPSDFFLASSVAEVTDYSDFLSRLRRYMCN 317
           +P + L + N   DH       + Y +T+K  + F+ A +    TDYSD    L+R++  
Sbjct: 621 LPEVQLLLNNHTADHFMFLGPNIDY-QTMKQRTTFYEALTRLLTTDYSDDEEMLQRFLRP 679

Query: 318 LKPT 329
           L  T
Sbjct: 680 LTDT 683


>Z68335-5|CAL63990.1|  202|Caenorhabditis elegans Hypothetical
           protein C05C12.6 protein.
          Length = 202

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +3

Query: 147 ILLGIRNAWKDHIGSSSAELVYGETLKLPSDFFLASSVAEVTDYSDFLSR 296
           ILL   + W+  I  +  E    E  KL   F + +S  + TD+ D  SR
Sbjct: 136 ILLSFIHVWQAIIIYTCLEYYEDEYRKLEEGFCVETSRLDATDFDDSRSR 185


>Z68333-5|CAA92724.2|  202|Caenorhabditis elegans Hypothetical
           protein C05C12.6 protein.
          Length = 202

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +3

Query: 147 ILLGIRNAWKDHIGSSSAELVYGETLKLPSDFFLASSVAEVTDYSDFLSR 296
           ILL   + W+  I  +  E    E  KL   F + +S  + TD+ D  SR
Sbjct: 136 ILLSFIHVWQAIIIYTCLEYYEDEYRKLEEGFCVETSRLDATDFDDSRSR 185


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,381,483
Number of Sequences: 27780
Number of extensions: 161693
Number of successful extensions: 382
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)