Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_A22
         (444 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...   116   1e-27
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    30   0.18 
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   3.0  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    26   3.0  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    25   5.2  
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch...    25   6.9  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    25   6.9  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    25   6.9  
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.9  
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c...    24   9.1  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    24   9.1  
SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc...    24   9.1  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  116 bits (280), Expect = 1e-27
 Identities = 53/84 (63%), Positives = 66/84 (78%)
 Frame = +3

Query: 189 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQCQKAVLQRRLKVPPPINQFTQTLDKT 368
           LF  R ++F IGQDIQP RDLSRFV+WP+YIR+Q ++ +L  RLKVPP I QF +TLDK 
Sbjct: 26  LFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKN 85

Query: 369 TAKGLFKILEKYRPETEAVRKERL 440
           TA  +FK+L KYRPET A +K+RL
Sbjct: 86  TATQVFKLLNKYRPETAAEKKQRL 109


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1369

 Score = 29.9 bits (64), Expect = 0.18
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 234 QPTRDLSR-FVRWPKYIRIQCQKAVLQRRLKVPPP 335
           QP RD +R FV+   Y+ IQC+K   +  L +PPP
Sbjct: 737 QPARDAARHFVQRWNYL-IQCKKPARKTPLLIPPP 770


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 297 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 398
           KAVL   LK  P IN F + L     + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 310 SVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTG 408
           S V   R Q+TSSP + ++PQ KV +  +   G
Sbjct: 182 SSVLSGRMQNTSSPTNSLRPQLKVQTNGYETPG 214


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 9/13 (69%), Positives = 13/13 (100%)
 Frame = +3

Query: 369 TAKGLFKILEKYR 407
           TA+GL+K+LEKY+
Sbjct: 94  TAQGLYKMLEKYK 106


>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 754

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 315 RLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETEAVRKERL 440
           RL +  P+  F     KTTAK L +   + RP+ E +R   L
Sbjct: 455 RLSLNRPVRVFVDN-KKTTAKLLTQEFVRVRPQRELLRPAML 495


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 173 EDCKPSIREENKELCY 220
           E CK  + + NKELCY
Sbjct: 947 EACKACLLQGNKELCY 962


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +2

Query: 74  ELKSIQDGXXXXXXXDREKSSGRSTCGEES*A-QEDCKPSIREENKELC 217
           ELKS+ +G       D   S   S C +E  +     KPS   + K+ C
Sbjct: 215 ELKSVNEGSSCCSKKDSSPSEKPSCCSQEKKSCCSSKKPSCCSQEKKGC 263


>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 215

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 340 TSSPRH*IKPQPKVCSRSWRNTGQKLRQSGKSV 438
           + + RH + P+ ++C  S RN G    +S K V
Sbjct: 106 SKAQRHVLDPRCQICVHSQRNDGDDNLESDKFV 138


>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
           complex subunit Rrn5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 556

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 436 RSFLTASVSGLYFSKILNRPLAVVLSNVWVNW 341
           R+ + ASV      K  + P+A+ +S  W++W
Sbjct: 124 RNHVDASVRSQCLLKYEDIPIAMEMSQNWIDW 155


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 272 EIYSHPVSKGCVTASSQSA 328
           E++SHP   GC + SS  +
Sbjct: 251 EVFSHPFLMGCTSLSSMDS 269


>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 295 KRLCYSVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTGQKL 417
           K+L   ++ K R Q T SP       P   + SW + GQ+L
Sbjct: 140 KQLVRDILEKAR-QHTISPLDEQDSGPSSLASSWASVGQRL 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,740,271
Number of Sequences: 5004
Number of extensions: 32525
Number of successful extensions: 103
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)