Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_A22
         (444 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894...   115   2e-26
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341...   115   2e-26
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892...    91   4e-19
08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497     28   3.9  
01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198     27   5.1  
11_01_0680 - 5554012-5554028,5555525-5555678,5555790-5555951,555...    27   9.0  
03_02_0112 + 5689439-5689474,5689629-5689778,5690194-5690361,569...    27   9.0  

>09_04_0677 -
           19388888-19389019,19389124-19389216,19389317-19389445,
           19389559-19389728,19390280-19390481,19390576-19390623,
           19390797-19390799
          Length = 258

 Score =  115 bits (276), Expect = 2e-26
 Identities = 52/84 (61%), Positives = 65/84 (77%)
 Frame = +3

Query: 189 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQCQKAVLQRRLKVPPPINQFTQTLDKT 368
           LFEKR K F IG  + P +DL RFV+WPK +RIQ Q+ +L++RLKVPP +NQFT+TLDK 
Sbjct: 24  LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKN 83

Query: 369 TAKGLFKILEKYRPETEAVRKERL 440
            A  LFK+L KYRPE +A +KERL
Sbjct: 84  LATNLFKMLLKYRPEDKAAKKERL 107


>08_02_0211 -
           14333553-14333684,14333795-14333887,14334019-14334105,
           14334220-14334389,14334985-14335186,14335604-14335606
          Length = 228

 Score =  115 bits (276), Expect = 2e-26
 Identities = 52/84 (61%), Positives = 65/84 (77%)
 Frame = +3

Query: 189 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQCQKAVLQRRLKVPPPINQFTQTLDKT 368
           LFEKR K F IG  + P +DL RFV+WPK +RIQ Q+ +L++RLKVPP +NQFT+TLDK 
Sbjct: 8   LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKN 67

Query: 369 TAKGLFKILEKYRPETEAVRKERL 440
            A  LFK+L KYRPE +A +KERL
Sbjct: 68  LATNLFKMLLKYRPEDKAAKKERL 91


>01_07_0018 -
           40488702-40488833,40488928-40489020,40489125-40489253,
           40489379-40489500,40490292-40490544,40490636-40490638
          Length = 243

 Score = 91.1 bits (216), Expect = 4e-19
 Identities = 44/85 (51%), Positives = 57/85 (67%)
 Frame = +3

Query: 189 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQCQKAVLQRRLKVPPPINQFTQTLDKT 368
           LFEKR K F IG  + P +DL RFVRWPK +RIQ Q+ VL++RLKVPP +NQFT+TLDK 
Sbjct: 25  LFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLDKN 84

Query: 369 TAKGLFKILEKYRPETEAVRKERLK 443
                 ++L++ + E E    E  K
Sbjct: 85  LGCQKERLLKRAQAEAEGKTVEAKK 109


>08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497
          Length = 369

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +1

Query: 310 SVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTGQKLRQSGKS 435
           +++   +R S++      K QP  C+RSW   G+  +Q G++
Sbjct: 74  TMIEDLKRSSSADTMEQTK-QPLSCARSWSTCGKSSKQRGRN 114


>01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198
          Length = 683

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +2

Query: 173 EDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPVSKGCVTASSQSA 328
           ED +  +  E+ +L +W    A   S PF   A     P  +  V +SS  A
Sbjct: 398 EDGRSKLTSESNQLTFWSDSQAGNGSSPFHHSAGGGMSPYYRDVVLSSSSKA 449


>11_01_0680 -
           5554012-5554028,5555525-5555678,5555790-5555951,
           5556130-5557148,5559808-5559835,5560996-5561079,
           5561442-5561654,5562267-5562569
          Length = 659

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 213 FAIGQDIQPTRDLSRFVRWPKYIRIQCQKAVLQRRL 320
           F++G       D  R  RW ++  + CQ  VLQ RL
Sbjct: 26  FSLGGLSDFAADARRVDRWFRHAAVMCQARVLQLRL 61


>03_02_0112 +
           5689439-5689474,5689629-5689778,5690194-5690361,
           5691334-5691458,5691914-5692007,5692844-5692942,
           5693730-5693910,5694051-5694166,5694758-5694913,
           5695226-5695354,5695554-5695718
          Length = 472

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 299 LLTLDANIFRPSHETG*ISGWL 234
           LLT + N  RPSH    + GW+
Sbjct: 102 LLTKNPNFVRPSHRLNEVQGWV 123


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,626,302
Number of Sequences: 37544
Number of extensions: 220583
Number of successful extensions: 619
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)