Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_A19
         (355 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    31   0.052
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    30   0.091
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    29   0.28 
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    28   0.48 
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    26   2.0  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    25   2.6  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    25   4.5  
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    25   4.5  
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    24   6.0  
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz...    24   7.9  
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    24   7.9  
SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos...    24   7.9  

>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 31.1 bits (67), Expect = 0.052
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 125 FTGHGGKQRTKREATEHTNHFDPSGHSRKIVTTLVNTENN 244
           ++GH         +T   NHF+ +GH    +T  +N+ NN
Sbjct: 242 YSGHNSPHTNYSASTPSFNHFNAAGHPTGNITPTLNSPNN 281


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 30.3 bits (65), Expect = 0.091
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -1

Query: 334 PPFARQLGNIPSTSHSRVYSPLHLLFIGLFVVLR 233
           P + R+L    S S+SR  SPLH LF+ L + ++
Sbjct: 762 PSYRRRLSMSCSVSYSRSPSPLHALFLALLLGIK 795


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 28.7 bits (61), Expect = 0.28
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +2

Query: 101 NFDHDKHIFTGHGGKQRTKREATEHTNHFDPSGHSRKIVTTLVNTENNKKSNKQ 262
           N + D +    H  K        +  +HFDPS + +K+V+      N K S+ Q
Sbjct: 18  NEEDDDYYSNAHSEKSEDHSNHIK-VSHFDPSSYKQKLVSVRETQRNRKFSSLQ 70


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 27.9 bits (59), Expect = 0.48
 Identities = 13/46 (28%), Positives = 18/46 (39%)
 Frame = +2

Query: 86  EYDYYNFDHDKHIFTGHGGKQRTKREATEHTNHFDPSGHSRKIVTT 223
           +YD++N DH  H    H     +  EA          GHS   + T
Sbjct: 21  DYDHHNHDHHGHDHHSHDSSSNSSSEAA-RLQFIQEHGHSHDAMET 65


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 267 IYCLLDFLLFSVFTNVVTIFLEC 199
           ++CL D+  FS+F+  + I LEC
Sbjct: 211 LWCLDDYWYFSLFSMFMIIALEC 233


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +1

Query: 208 KDRHDVSEYGEQQKVQ*TIDVTVNKHDYGL*KEYY 312
           +D   ++E  E  +++   ++ VN HDY   +E++
Sbjct: 54  QDEFSLTENEENNEIETNEEMHVNSHDYAFPQEFF 88


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 282 TRLWLVEGILPSCLAKGGRYG 344
           T  WL EG+ P C+ +  ++G
Sbjct: 440 TESWLKEGLRPRCITRDLKWG 460


>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -2

Query: 255 LDFLLFSVFTNVVTIFLECPEGSK*FVCSVASRLVRCLPPCP 130
           L F +F+ FT++ T+ +  P  S  F   V S        CP
Sbjct: 4   LRFFIFTFFTSIFTVVVSEPPVSAKFAKRVLSATSSSSSTCP 45


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 264 YCLLDFLLFSVFTNVVTIFLECPEGSK 184
           Y +LDF  F   +  +T ++E P+G +
Sbjct: 529 YKVLDFHPFDPVSKKITAYVEAPDGQR 555


>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
           Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 15/49 (30%), Positives = 19/49 (38%)
 Frame = +2

Query: 77  FFDEYDYYNFDHDKHIFTGHGGKQRTKREATEHTNHFDPSGHSRKIVTT 223
           FFDE D            G    QRT  E     + FDP G+ + +  T
Sbjct: 277 FFDEIDAIGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVLFAT 325


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 50  FTNVTMSEAFFDEYDYYNFDHDKHIFTGHGGKQRTKRE 163
           FT+    E   DE  +Y F +DK+I      K +  R+
Sbjct: 679 FTSKKQEEIPVDELFFYRFFNDKYIKGKQARKTKVDRD 716


>SPAC664.07c |rad9||checkpoint clamp complex protein
           Rad9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 50  FTNVTMSEAFFDEYDYYNFDHDKHIFTG 133
           F+ VT+ +AFFD+   Y F  D  + TG
Sbjct: 48  FSMVTLKKAFFDK---YIFQPDSVLLTG 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,439,248
Number of Sequences: 5004
Number of extensions: 26734
Number of successful extensions: 73
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)