Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_A19
         (355 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0578 + 22473492-22473784,22473795-22474559,22474673-22475033     27   3.2  
05_07_0146 + 28018236-28018580,28018670-28018777,28018984-280191...    27   3.2  
05_03_0160 - 9044194-9044432,9045361-9045562,9046307-9046411,904...    26   7.4  
08_02_1110 + 24371934-24374763,24375034-24375518                       26   9.8  
04_04_1086 - 30725010-30725138,30725748-30725786,30725876-307259...    26   9.8  
01_06_0359 + 28722524-28722613,28722794-28722863,28723062-287231...    26   9.8  

>06_03_0578 + 22473492-22473784,22473795-22474559,22474673-22475033
          Length = 472

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +2

Query: 14  SSALIVFCTYNLFTNVTMSEAFFDEYDYYNFDHDKHIFTGHGGKQRTKREATEHTNHFDP 193
           + +L+++  + L +    SEA   EYD Y     + +      +   KR+  E TN F+ 
Sbjct: 13  AGSLVLYAVFLLLSAAATSEANIGEYDEY--WQKRKLMADAAAEATYKRDPFEVTNSFNR 70

Query: 194 SGH 202
           + H
Sbjct: 71  AVH 73


>05_07_0146 +
           28018236-28018580,28018670-28018777,28018984-28019148,
           28019269-28019736,28019823-28019936,28020038-28020715
          Length = 625

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +2

Query: 101 NFDHDKHIFTGHGGKQR--TKREATEHTNH 184
           +FDH  H    HGG++R  +  EA  H +H
Sbjct: 275 HFDHHNHHHPIHGGRERGSSPAEADHHRHH 304


>05_03_0160 -
           9044194-9044432,9045361-9045562,9046307-9046411,
           9046523-9046897,9046956-9047208,9047349-9047563
          Length = 462

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 193 GVEVIRVFGGLPLGTLFTSVSGEN 122
           G+E+I+  GGLPL   +  +  EN
Sbjct: 301 GMEIIKKCGGLPLAVKYLEIEFEN 324


>08_02_1110 + 24371934-24374763,24375034-24375518
          Length = 1104

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +2

Query: 11  LSSALIVFCTYNLFTNVTMSEAFFDEYDYYNFDHDKHIFTGHGGKQRTKREA 166
           L + + +  +YN F+      AFF +    +   +  +  G GG + T+R A
Sbjct: 653 LENLVTLNISYNAFSGELPDTAFFQKLPINDIAGNHLLVVGSGGDEATRRAA 704


>04_04_1086 -
           30725010-30725138,30725748-30725786,30725876-30725998,
           30726953-30727015,30727540-30727620,30727998-30728088,
           30728295-30728366,30728452-30728552,30728681-30728779,
           30729132-30729329,30730792-30730824,30731084-30731192,
           30732088-30732149,30732388-30732468,30732549-30732704,
           30732812-30732976,30733351-30733413,30733492-30733545,
           30733574-30733612,30733727-30733783,30733862-30733930,
           30734022-30734135,30734216-30734284,30734821-30734927,
           30735207-30735363
          Length = 776

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +2

Query: 41  YNLFTNVTMSEAFFDEYDYYNFDHDKHI 124
           Y + TN++  ++F+D   + NF + KH+
Sbjct: 591 YLIGTNISFIDSFYDPGPHGNFRYSKHM 618


>01_06_0359 +
           28722524-28722613,28722794-28722863,28723062-28723159,
           28724029-28724167,28724243-28724370,28724500-28724592,
           28724707-28724757,28725405-28725470,28725568-28725633,
           28725900-28725977,28726248-28726427,28726502-28726577,
           28726660-28726823,28727569-28727931
          Length = 553

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 137 GGKQRTKREATEHTNHFDPSGHSRKIVTTLVNTENN 244
           GG+  T   AT     FDP+G    +VTT     N+
Sbjct: 379 GGETSTSGTATLQDKGFDPTGWELALVTTPSTNTNS 414


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,259,407
Number of Sequences: 37544
Number of extensions: 170403
Number of successful extensions: 411
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)