Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_A19
         (355 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22181-7|CAA80189.2|   62|Caenorhabditis elegans Hypothetical pr...    34   0.033
AF022976-4|AAC69083.2|  345|Caenorhabditis elegans Serpentine re...    28   2.2  
Z81540-12|CAB04396.2|  149|Caenorhabditis elegans Hypothetical p...    27   2.8  
U88308-3|AAB42329.2|  430|Caenorhabditis elegans Resistance to i...    27   3.8  
U41993-5|AAA83447.2|  451|Caenorhabditis elegans Hypothetical pr...    27   5.0  
AF022971-9|AAG23978.2|  345|Caenorhabditis elegans Serpentine re...    27   5.0  
Z68295-1|CAA92587.1|  325|Caenorhabditis elegans Hypothetical pr...    26   6.6  
U56963-2|AAB38119.2|  326|Caenorhabditis elegans Neuropeptide-li...    26   6.6  
Z74475-3|CAA98957.2|  567|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical p...    26   8.7  
Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical pr...    26   8.7  
U20864-3|AAC46662.1|  574|Caenorhabditis elegans Hypothetical pr...    26   8.7  
AC024843-5|AAK70666.3|  740|Caenorhabditis elegans Hypothetical ...    26   8.7  

>Z22181-7|CAA80189.2|   62|Caenorhabditis elegans Hypothetical
           protein ZK632.9 protein.
          Length = 62

 Score = 33.9 bits (74), Expect = 0.033
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 137 GGKQRTKREATEHTNHFDPSGHSRKIVTTLVNTENNKK 250
           G  +RTK +  EH +   P G +RK+V T  N E  +K
Sbjct: 23  GSGKRTKSDRVEHKHASQPGGDTRKVVQTASNGEAKRK 60


>AF022976-4|AAC69083.2|  345|Caenorhabditis elegans Serpentine
           receptor, class h protein37 protein.
          Length = 345

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -3

Query: 266 SIVYWTFCCSPYSL 225
           SI+Y+TFCC P+S+
Sbjct: 253 SILYFTFCCVPFSV 266


>Z81540-12|CAB04396.2|  149|Caenorhabditis elegans Hypothetical
           protein F46B3.15 protein.
          Length = 149

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 213 IFLECPEGSK*FVCSVASRLVRCLPPCPVKMC 118
           +F  CP+ S   V    ++ V   PPC +K C
Sbjct: 88  VFTTCPKMSSCIVVDGKAKCVPRSPPCTIKQC 119


>U88308-3|AAB42329.2|  430|Caenorhabditis elegans Resistance to
           inhibitors of cholinesteraseprotein 19 protein.
          Length = 430

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +2

Query: 89  YDYYNFDHDKHIFTGHGGKQRTKREATEHTNHFDPSGHSRKIVTTLVNTEN 241
           Y+ Y+F+   H+ TG   ++  K E  E      P G+  ++   L   E+
Sbjct: 265 YNNYDFEILSHLATGTKPERERKSEKEESAKTSQPRGNEEELKNLLFGRES 315


>U41993-5|AAA83447.2|  451|Caenorhabditis elegans Hypothetical
           protein F44A2.2 protein.
          Length = 451

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 14  SSALIVFCTYNLFTNVTMSEAFFDEYDYYNFDHDKHIF 127
           +S L VFC  +    +T  +AFF+    Y F+    IF
Sbjct: 50  TSRLAVFCEKSHVERLTDCDAFFESTSEYYFERSPIIF 87


>AF022971-9|AAG23978.2|  345|Caenorhabditis elegans Serpentine
           receptor, class h protein38 protein.
          Length = 345

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = -3

Query: 266 SIVYWTFCCSPYSL 225
           +I+Y+TFCC P+S+
Sbjct: 253 AILYFTFCCVPFSV 266


>Z68295-1|CAA92587.1|  325|Caenorhabditis elegans Hypothetical
           protein C07C7.1 protein.
          Length = 325

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 8/24 (33%), Positives = 18/24 (75%)
 Frame = -2

Query: 324 LGNSVIFLLQAIVVFIHRYIYCLL 253
           LG+  IFLL  ++++++  +YC++
Sbjct: 143 LGSLYIFLLDYLLIYLYFQVYCVM 166


>U56963-2|AAB38119.2|  326|Caenorhabditis elegans Neuropeptide-like
           protein protein16 protein.
          Length = 326

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 113 DKHIFTGHGGKQRTKREATEHTNHFDPSGHSRK 211
           ++ +   HG   R KR + EH  H DP  H+ K
Sbjct: 78  EEEVEISHGMHHREKRHS-EHLPHPDPPSHTAK 109


>Z74475-3|CAA98957.2|  567|Caenorhabditis elegans Hypothetical
           protein R04F11.4 protein.
          Length = 567

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = +2

Query: 92  DYYNFDHDKHIFTGHGGKQRTKREATEHTNHFDPSGHSRKI 214
           D   FD+   I  G  G +       E    FDPS H +++
Sbjct: 298 DAGTFDNISEINDGSEGGENENEGEEEEQIQFDPSNHEKRV 338


>Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical
           protein C28A5.6 protein.
          Length = 1061

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +2

Query: 68  SEAFFD-EYDYYNFDHDKHIFTGHGGKQRTKREATEHTNHFDPSGHSRKIVTTLVNTENN 244
           S+ F D + D  +     H+ +   G+   K+E+ + T+  +PS       T    TEN 
Sbjct: 139 SDCFSDKDLDAVSASSSSHLISEEDGEVGEKKESEQPTDMVEPSSAP---TTEETETENE 195

Query: 245 KKSNKQ 262
           ++ +K+
Sbjct: 196 EEDDKE 201


>Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical
           protein C28A5.6 protein.
          Length = 1061

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +2

Query: 68  SEAFFD-EYDYYNFDHDKHIFTGHGGKQRTKREATEHTNHFDPSGHSRKIVTTLVNTENN 244
           S+ F D + D  +     H+ +   G+   K+E+ + T+  +PS       T    TEN 
Sbjct: 139 SDCFSDKDLDAVSASSSSHLISEEDGEVGEKKESEQPTDMVEPSSAP---TTEETETENE 195

Query: 245 KKSNKQ 262
           ++ +K+
Sbjct: 196 EEDDKE 201


>U20864-3|AAC46662.1|  574|Caenorhabditis elegans Hypothetical
           protein F32A5.3 protein.
          Length = 574

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +2

Query: 80  FDEYDYYNFDHDKHIFTG--HGGKQRTKREATE 172
           FD+Y++Y   +DK +F      G +R KR A +
Sbjct: 290 FDQYNFYQECYDKSVFQAPPPAGGKRHKRSAMQ 322


>AC024843-5|AAK70666.3|  740|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.8 protein.
          Length = 740

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = +2

Query: 155 KREATEHTNHFDPSGHSRKIVTTLVNTENNKKSNKQ*M*R*INTTMACRRNI 310
           K +   H +H     H RKI+T+ +  + +   +K+     +++T+  +RNI
Sbjct: 184 KHDRHHHKDHRRGRSHERKIITSTIVRQASASPDKK-----LHSTVTVKRNI 230


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,015,908
Number of Sequences: 27780
Number of extensions: 155559
Number of successful extensions: 421
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)