Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_A18
         (403 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces...    63   1e-11
SPBC32H8.05 |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.1  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    26   1.9  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    26   2.5  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    25   4.4  
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   7.7  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    24   7.7  

>SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score = 63.3 bits (147), Expect = 1e-11
 Identities = 27/34 (79%), Positives = 33/34 (97%)
 Frame = +2

Query: 110 KSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIK 211
           KSAIN+VVTR+YT+++HKRL+GV FKKRAPRAIK
Sbjct: 6   KSAINQVVTRDYTIHMHKRLYGVSFKKRAPRAIK 39



 Score = 50.4 bits (115), Expect = 1e-07
 Identities = 25/58 (43%), Positives = 34/58 (58%)
 Frame = +1

Query: 226 FAEKQMGTPDVRVDTRLNKYLWSKGVRNVPFXXXXXXXXXXNDDEDSAHQLFTLVTYV 399
           FA+K M T +VRVD  LNK +W +G+RNVP           +D++D A  L+T V  V
Sbjct: 44  FAQKHMQTKEVRVDPSLNKEVWKRGIRNVPHRLRLRLSRKRSDEDDKA--LYTYVQAV 99


>SPBC32H8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 117

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +2

Query: 65  NSTTTMAKPKGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKGDPRDSLKNKW 244
           N  T  +  K E    +++ EV + E + N       VG +   P+     PRD+ +NKW
Sbjct: 42  NDLTKSSSSKEEGIADNSLKEVSSSEVSDN-------VGMEVDQPKVSTSGPRDNNRNKW 94


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -2

Query: 96   PLGFAIVVVEFRPRPNSQP 40
            PL   +VV EF+PRP+++P
Sbjct: 1077 PLPKDVVVKEFKPRPSTKP 1095


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 136  SNDFIYGRFAFPLSFGFCH 80
            S+DF  GRF F +   FCH
Sbjct: 1271 SSDFSIGRFKFLIKLLFCH 1289


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
            3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1385

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 17/68 (25%), Positives = 29/68 (42%)
 Frame = +3

Query: 6    HRVAASKLWIPRAENSAEDEILRPQWQNPKERGKANLP*MKSLLVNIR*IYTNDFTVLVS 185
            H    S +    A+N+ +D +     ++P       L  +K++  NI   +TND   L S
Sbjct: 876  HSGEVSAIQHSSAQNTLDDHVNTTTHESPSSAFTEILERLKAIEQNISTNHTNDSAALKS 935

Query: 186  RSVHPVLS 209
               H  L+
Sbjct: 936  SEDHSKLA 943


>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 529

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 237 TNGYSRRKSRYPPKQISLVKRSQE 308
           T G +  +SR PP+QIS+    +E
Sbjct: 83  TKGRAHPRSRRPPRQISIDSAKKE 106


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 17/62 (27%), Positives = 23/62 (37%)
 Frame = +1

Query: 19  RLNYGSPGLRIRPRTKFYDHNGKTQRREERQICHK*SRYS*IYGKFTQTTSRCWFQEACT 198
           RLN+ S    + P  +  D N    RR    I +    Y  I      T++ C F     
Sbjct: 290 RLNFLSFSFCVNPMNQSLDCNTTPHRRNASSIIYTLMYYLIIAPTLLITSAICMFTIFFV 349

Query: 199 PC 204
           PC
Sbjct: 350 PC 351


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,826,611
Number of Sequences: 5004
Number of extensions: 36643
Number of successful extensions: 84
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)