Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_A18
         (403 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1181 - 24985963-24986242,24987109-24987197                       67   6e-12
06_02_0140 + 12255418-12255512,12257514-12257793                       66   1e-11
02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649     63   7e-11
04_03_0303 + 14108902-14109208,14109259-14109286,14110120-141105...    27   5.6  
07_03_0725 + 20991640-20992471,20993308-20993418,20993542-209937...    27   7.3  

>08_02_1181 - 24985963-24986242,24987109-24987197
          Length = 122

 Score = 66.9 bits (156), Expect = 6e-12
 Identities = 28/57 (49%), Positives = 40/57 (70%)
 Frame = +1

Query: 223 RFAEKQMGTPDVRVDTRLNKYLWSKGVRNVPFXXXXXXXXXXNDDEDSAHQLFTLVT 393
           +FA+K MGT DVRVD +LNK++WS G+R+VP           ND+ED+  +L++LVT
Sbjct: 45  KFAQKAMGTTDVRVDVKLNKHIWSSGIRSVPRRVRVRIARKRNDEEDAKEELYSLVT 101



 Score = 56.0 bits (129), Expect = 1e-08
 Identities = 27/39 (69%), Positives = 31/39 (79%), Gaps = 1/39 (2%)
 Frame = +2

Query: 98  ERKGKSAINE-VVTREYTVNLHKRLHGVGFKKRAPRAIK 211
           E+KG +A  E VVTREYT+NLHKRLH   FKK+AP AIK
Sbjct: 3   EKKGGAARKEEVVTREYTINLHKRLHSCTFKKKAPNAIK 41


>06_02_0140 + 12255418-12255512,12257514-12257793
          Length = 124

 Score = 66.1 bits (154), Expect = 1e-11
 Identities = 28/57 (49%), Positives = 40/57 (70%)
 Frame = +1

Query: 223 RFAEKQMGTPDVRVDTRLNKYLWSKGVRNVPFXXXXXXXXXXNDDEDSAHQLFTLVT 393
           +FA+K MGT DVRVD +LNK++WS G+R+VP           ND+ED+  +L++LVT
Sbjct: 47  KFAQKAMGTIDVRVDVKLNKHIWSSGIRSVPRRVRVRIARRRNDEEDAKEELYSLVT 103



 Score = 60.1 bits (139), Expect = 6e-10
 Identities = 27/40 (67%), Positives = 32/40 (80%)
 Frame = +2

Query: 92  KGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIK 211
           K +R G +  +EVVTREYT+NLHKRLHG  FKK+AP AIK
Sbjct: 4   KKQRPGGARKDEVVTREYTINLHKRLHGCTFKKKAPNAIK 43


>02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649
          Length = 139

 Score = 63.3 bits (147), Expect = 7e-11
 Identities = 25/57 (43%), Positives = 39/57 (68%)
 Frame = +1

Query: 223 RFAEKQMGTPDVRVDTRLNKYLWSKGVRNVPFXXXXXXXXXXNDDEDSAHQLFTLVT 393
           +FA+K MGT D+R+D +LNK +W+ G+R+VP           ND+ED+  +L++LVT
Sbjct: 62  KFAQKAMGTTDIRIDVKLNKAIWTNGIRSVPRRVRVRISRKRNDEEDAKEELYSLVT 118



 Score = 40.3 bits (90), Expect = 6e-04
 Identities = 16/18 (88%), Positives = 18/18 (100%)
 Frame = +2

Query: 122 NEVVTREYTVNLHKRLHG 175
           +EVVTREYT+NLHKRLHG
Sbjct: 13  DEVVTREYTINLHKRLHG 30


>04_03_0303 +
           14108902-14109208,14109259-14109286,14110120-14110505,
           14111071-14111604,14112362-14112445,14112933-14113516
          Length = 640

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
 Frame = +1

Query: 73  DHNGKTQRREERQICHK*SRYS*IYGKFTQTTSRCWFQEACTPCYQGR--SARFAEKQMG 246
           DH+   + + ++      S++S      + T SR  +   CT  YQG   +     + +G
Sbjct: 182 DHSTCAEAKRDKSSYACASKHSRCDDNLSFTASRAGYLCKCTDGYQGNPYAPNGCRRDVG 241

Query: 247 TPDVRVDTRLNKYLWSKGVRNV 312
            PD R D   +K   S    N+
Sbjct: 242 LPDARYDRFPSKNNCSPSCGNI 263


>07_03_0725 +
           20991640-20992471,20993308-20993418,20993542-20993739,
           20993860-20993891,20993943-20994153,20994806-20995043,
           20995507-20995657,20996171-20996533
          Length = 711

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -1

Query: 403 RAHMLQG*TVGVLSLHHHCVCEIVLHEHGMEHS*LLLTKDI 281
           R H+++G   G+L LH H    I+     ++ S +LL KD+
Sbjct: 474 RLHIIEGVVQGLLYLHKHSRVRII--HRDLKASNILLDKDL 512


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,527,748
Number of Sequences: 37544
Number of extensions: 263903
Number of successful extensions: 569
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)