Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_A18
(403 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82077-3|CAB63331.1| 122|Caenorhabditis elegans Hypothetical pr... 79 9e-16
Z82077-4|CAB63332.1| 70|Caenorhabditis elegans Hypothetical pr... 73 6e-14
AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen prot... 30 0.71
AC024805-16|AAK39336.1| 448|Caenorhabditis elegans Hypothetical... 30 0.71
U42846-2|AAA83601.1| 108|Caenorhabditis elegans Hypothetical pr... 28 2.2
U10438-5|AAA19086.1| 395|Caenorhabditis elegans Nuclear hormone... 28 2.2
AY204168-1|AAO39172.1| 395|Caenorhabditis elegans nuclear recep... 28 2.2
AC024859-21|AAK29962.4| 490|Caenorhabditis elegans Twik family ... 28 2.2
AL032655-4|CAB63413.2| 485|Caenorhabditis elegans Hypothetical ... 27 6.7
>Z82077-3|CAB63331.1| 122|Caenorhabditis elegans Hypothetical
protein W09C5.6a protein.
Length = 122
Score = 79.4 bits (187), Expect = 9e-16
Identities = 34/60 (56%), Positives = 45/60 (75%)
Frame = +1
Query: 223 RFAEKQMGTPDVRVDTRLNKYLWSKGVRNVPFXXXXXXXXXXNDDEDSAHQLFTLVTYVP 402
+FA+ QM T DVRVDT+LNK++WSKG++NVP+ N+DEDSA +L+TL TYVP
Sbjct: 47 KFAKIQMKTNDVRVDTKLNKFIWSKGIKNVPYRVRVRLSRRRNEDEDSAQKLYTLCTYVP 106
Score = 65.3 bits (152), Expect = 2e-11
Identities = 27/40 (67%), Positives = 34/40 (85%)
Frame = +2
Query: 89 PKGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAI 208
PK E+K +S INEVVTREYT+++H R+ G+G KKRAPRAI
Sbjct: 3 PKNEKKSRSTINEVVTREYTIHIHARIRGIGSKKRAPRAI 42
>Z82077-4|CAB63332.1| 70|Caenorhabditis elegans Hypothetical
protein W09C5.6b protein.
Length = 70
Score = 73.3 bits (172), Expect = 6e-14
Identities = 31/54 (57%), Positives = 40/54 (74%)
Frame = +1
Query: 241 MGTPDVRVDTRLNKYLWSKGVRNVPFXXXXXXXXXXNDDEDSAHQLFTLVTYVP 402
M T DVRVDT+LNK++WSKG++NVP+ N+DEDSA +L+TL TYVP
Sbjct: 1 MKTNDVRVDTKLNKFIWSKGIKNVPYRVRVRLSRRRNEDEDSAQKLYTLCTYVP 54
>AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen protein
70 protein.
Length = 530
Score = 29.9 bits (64), Expect = 0.71
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = -2
Query: 210 LIARGARFLKPTP*SRLCKFTVYSRVTTSFMADLPFLSPL---GFAIVVVEFRPRPNSQP 40
++ G R + RLC V +T S + D P + PL G +V P P+ P
Sbjct: 164 IVQNGQRVIVNCATCRLC--CVGRNITYSVVTDSPVVPPLVVTGTPSIVTVTPPSPSVTP 221
Query: 39 GGSIV*TPP 13
GG TPP
Sbjct: 222 GGRPGSTPP 230
>AC024805-16|AAK39336.1| 448|Caenorhabditis elegans Hypothetical
protein Y51H7C.1 protein.
Length = 448
Score = 29.9 bits (64), Expect = 0.71
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = -2
Query: 210 LIARGARFLKPTP*SRLCKFTVYSRVTTSFMADLPFLSPL---GFAIVVVEFRPRPNSQP 40
++ G R + RLC V +T S + D P + PL G +V P P+ P
Sbjct: 87 IVQNGQRVIVNCATCRLC--CVGRNITYSVVTDSPVVPPLVVTGTPSIVTVTPPSPSVTP 144
Query: 39 GGSIV*TPP 13
GG TPP
Sbjct: 145 GGRPGSTPP 153
>U42846-2|AAA83601.1| 108|Caenorhabditis elegans Hypothetical
protein T19D2.3 protein.
Length = 108
Score = 28.3 bits (60), Expect = 2.2
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +1
Query: 175 CWFQEACTPCYQGRSARFAEKQMGTPD 255
C+F C CY+ R R K +G D
Sbjct: 48 CFFVTKCLQCYKARQRRLRRKALGEDD 74
>U10438-5|AAA19086.1| 395|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 10 protein.
Length = 395
Score = 28.3 bits (60), Expect = 2.2
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 243 GYSRRKSRYPPKQISLVKRSQECS 314
GY++R RYPP I V+ S ECS
Sbjct: 96 GYTKRTRRYPP--IKKVEASDECS 117
>AY204168-1|AAO39172.1| 395|Caenorhabditis elegans nuclear receptor
NHR-10 protein.
Length = 395
Score = 28.3 bits (60), Expect = 2.2
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 243 GYSRRKSRYPPKQISLVKRSQECS 314
GY++R RYPP I V+ S ECS
Sbjct: 96 GYTKRTRRYPP--IKKVEASDECS 117
>AC024859-21|AAK29962.4| 490|Caenorhabditis elegans Twik family of
potassium channelsprotein 45, isoform a protein.
Length = 490
Score = 28.3 bits (60), Expect = 2.2
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -1
Query: 328 HEHGMEHS*LL--LTKDICLGGYLLLRLEYP 242
H+ G+ H L+ L ICLGG+L +LE P
Sbjct: 45 HKFGIRHITLISILAAYICLGGFLFQKLESP 75
>AL032655-4|CAB63413.2| 485|Caenorhabditis elegans Hypothetical
protein Y6B3B.9 protein.
Length = 485
Score = 26.6 bits (56), Expect = 6.7
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +1
Query: 13 WRRLNYG-SPGLRIRPRTKFYDHNGKTQRREER 108
W + +G +PG RI T DH+G + R+ R
Sbjct: 442 WAEVPFGMAPGQRIETFTVVLDHHGSDKSRKRR 474
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,340,478
Number of Sequences: 27780
Number of extensions: 220248
Number of successful extensions: 500
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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