Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_A17
(482 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 28 0.85
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 27 1.1
SPBC13E7.04 |atp16||F1-ATPase delta subunit |Schizosaccharomyces... 27 2.0
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 26 2.6
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 26 2.6
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 4.5
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 4.5
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 4.5
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 4.5
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 4.5
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 4.5
SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr ... 25 4.5
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 4.5
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 4.5
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 4.5
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 4.5
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 4.5
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p... 25 6.0
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 25 6.0
SPCC191.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 6.0
SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces pomb... 25 7.9
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 7.9
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe... 25 7.9
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 27.9 bits (59), Expect = 0.85
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 109 MISTPIMFENPVVHMQKVLSEVNHLREEESKLRHEN 216
++ +PI+ N V +L+E+ +R + + L HEN
Sbjct: 118 LLDSPILDINSVTQKSNLLNELKQVRSKLAALEHEN 153
Score = 27.5 bits (58), Expect = 1.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 169 EVNHLREEESKLRHENLQLKEELLLVRQ 252
E+ L + KL EN Q+K+ELL +R+
Sbjct: 1096 ELEELTSKYGKLGEENAQIKDELLALRK 1123
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 27.5 bits (58), Expect = 1.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 142 VVHMQKVLSEVNHLREEESKLRHENLQLKEE 234
V +QK+L E EEE ++R E ++ EE
Sbjct: 247 VTALQKMLEEKRAREEEEQRIREEEARIAEE 277
>SPBC13E7.04 |atp16||F1-ATPase delta subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 160
Score = 26.6 bits (56), Expect = 2.0
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 292 RNGHAPRGLRRSPFGARGVTPLLIEDFRVVI 200
R P+GL R+PFG RG + ++ ++V+
Sbjct: 3 RKSQFPQGLVRAPFGIRGYAQAVQKNEKLVL 33
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 26.2 bits (55), Expect = 2.6
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -3
Query: 435 IVTSLPRGCTGY*YSH-EKFPNDYTDDRHTYGGCQ 334
IVT G + +SH EK+P Y D R + GG Q
Sbjct: 344 IVTIKHMGTNAFLHSHPEKYPIPYDDGRISSGGQQ 378
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 26.2 bits (55), Expect = 2.6
Identities = 11/41 (26%), Positives = 27/41 (65%)
Frame = +1
Query: 61 TKLKDDEVISASINRKMISTPIMFENPVVHMQKVLSEVNHL 183
T LK+DE++ AS+ ++S ++ + + QK+L++++ +
Sbjct: 716 TYLKEDEMLVASVRDDIVSEAVVGFSTDNNGQKILADISQV 756
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 4.5
Identities = 20/58 (34%), Positives = 30/58 (51%)
Frame = +1
Query: 70 KDDEVISASINRKMISTPIMFENPVVHMQKVLSEVNHLREEESKLRHENLQLKEELLL 243
KD E S + + IS F+N VV +++ +L E K EN+QLK+ LL+
Sbjct: 841 KDSEDNSINFVNQ-ISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLI 897
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 4.5
Identities = 20/58 (34%), Positives = 30/58 (51%)
Frame = +1
Query: 70 KDDEVISASINRKMISTPIMFENPVVHMQKVLSEVNHLREEESKLRHENLQLKEELLL 243
KD E S + + IS F+N VV +++ +L E K EN+QLK+ LL+
Sbjct: 841 KDSEDNSINFVNQ-ISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLI 897
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 4.5
Identities = 20/58 (34%), Positives = 30/58 (51%)
Frame = +1
Query: 70 KDDEVISASINRKMISTPIMFENPVVHMQKVLSEVNHLREEESKLRHENLQLKEELLL 243
KD E S + + IS F+N VV +++ +L E K EN+QLK+ LL+
Sbjct: 841 KDSEDNSINFVNQ-ISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLI 897
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 4.5
Identities = 20/58 (34%), Positives = 30/58 (51%)
Frame = +1
Query: 70 KDDEVISASINRKMISTPIMFENPVVHMQKVLSEVNHLREEESKLRHENLQLKEELLL 243
KD E S + + IS F+N VV +++ +L E K EN+QLK+ LL+
Sbjct: 841 KDSEDNSINFVNQ-ISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLI 897
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 4.5
Identities = 20/58 (34%), Positives = 30/58 (51%)
Frame = +1
Query: 70 KDDEVISASINRKMISTPIMFENPVVHMQKVLSEVNHLREEESKLRHENLQLKEELLL 243
KD E S + + IS F+N VV +++ +L E K EN+QLK+ LL+
Sbjct: 841 KDSEDNSINFVNQ-ISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLI 897
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 4.5
Identities = 20/58 (34%), Positives = 30/58 (51%)
Frame = +1
Query: 70 KDDEVISASINRKMISTPIMFENPVVHMQKVLSEVNHLREEESKLRHENLQLKEELLL 243
KD E S + + IS F+N VV +++ +L E K EN+QLK+ LL+
Sbjct: 841 KDSEDNSINFVNQ-ISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLI 897
>SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 200
Score = 25.4 bits (53), Expect = 4.5
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +1
Query: 187 EEESKLRHENLQLKEELLLVRQMAIGEGRVAR-AHSYGPEKVQ 312
E+E K R LK+ELL + I E + R A G EK+Q
Sbjct: 140 EDELKERQRLSTLKQELLKRKAALISENKAKRNALQKGDEKLQ 182
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 4.5
Identities = 20/58 (34%), Positives = 30/58 (51%)
Frame = +1
Query: 70 KDDEVISASINRKMISTPIMFENPVVHMQKVLSEVNHLREEESKLRHENLQLKEELLL 243
KD E S + + IS F+N VV +++ +L E K EN+QLK+ LL+
Sbjct: 841 KDSEDNSINFVNQ-ISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLI 897
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 4.5
Identities = 20/58 (34%), Positives = 30/58 (51%)
Frame = +1
Query: 70 KDDEVISASINRKMISTPIMFENPVVHMQKVLSEVNHLREEESKLRHENLQLKEELLL 243
KD E S + + IS F+N VV +++ +L E K EN+QLK+ LL+
Sbjct: 841 KDSEDNSINFVNQ-ISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLI 897
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 4.5
Identities = 20/58 (34%), Positives = 30/58 (51%)
Frame = +1
Query: 70 KDDEVISASINRKMISTPIMFENPVVHMQKVLSEVNHLREEESKLRHENLQLKEELLL 243
KD E S + + IS F+N VV +++ +L E K EN+QLK+ LL+
Sbjct: 841 KDSEDNSINFVNQ-ISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLI 897
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 4.5
Identities = 20/58 (34%), Positives = 30/58 (51%)
Frame = +1
Query: 70 KDDEVISASINRKMISTPIMFENPVVHMQKVLSEVNHLREEESKLRHENLQLKEELLL 243
KD E S + + IS F+N VV +++ +L E K EN+QLK+ LL+
Sbjct: 841 KDSEDNSINFVNQ-ISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLI 897
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 4.5
Identities = 20/58 (34%), Positives = 30/58 (51%)
Frame = +1
Query: 70 KDDEVISASINRKMISTPIMFENPVVHMQKVLSEVNHLREEESKLRHENLQLKEELLL 243
KD E S + + IS F+N VV +++ +L E K EN+QLK+ LL+
Sbjct: 841 KDSEDNSINFVNQ-ISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLI 897
>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 25.0 bits (52), Expect = 6.0
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 111 DIDTDYV*KSCCTYAKGIIRSKSSKRGGEQITTR 212
D+D +Y+ YA+GI+ K G+ +T R
Sbjct: 195 DLDEEYLITQPNVYARGILFGKMRLELGDHVTVR 228
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 25.0 bits (52), Expect = 6.0
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = -2
Query: 358 PPYLWRLPAMASTRLVAPSPVRRNGHAPRGLRRSPFGARGVTPLLIED 215
PP L + R VA SP+ + R +R FG + V P I +
Sbjct: 638 PPVGTELKTRPTLRSVASSPLNKEPIGKRKSKRDIFGRQKVLPTGISE 685
>SPCC191.03c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 117
Score = 25.0 bits (52), Expect = 6.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 358 PPYLWRLPAMASTRLVAP 305
PP L RLPA S R+++P
Sbjct: 16 PPSLTRLPAFPSPRILSP 33
>SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 287
Score = 24.6 bits (51), Expect = 7.9
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 100 NRKMISTPIMFENPVVHMQKVLSEVNHLR 186
N+K + TPIM + P V+ K ++ +R
Sbjct: 99 NKKELLTPIMLDMPCVYFVKTRPPIDPVR 127
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 24.6 bits (51), Expect = 7.9
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 132 KHNRCRYHFSVY*CRYYFIILQLCCSFIGTFF 37
+H R + +S R+YFIIL +C + + + F
Sbjct: 453 QHERDQRDWSAVCLRFYFIILVVCIASLYSAF 484
>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 24.6 bits (51), Expect = 7.9
Identities = 14/60 (23%), Positives = 22/60 (36%)
Frame = +3
Query: 144 CTYAKGIIRSKSSKRGGEQITTRKSSIKRGVTPRAPNGDRRRPRGACPFLRTGEGATSRV 323
C GI+ +S K + + K RG NGD + + P + E T +
Sbjct: 590 CILEYGIVEDQSMKSNPDLNSFSKELFSRGTNELLNNGDDTQSGNSTPAMGVSEIRTDTI 649
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,130,774
Number of Sequences: 5004
Number of extensions: 44590
Number of successful extensions: 171
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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