Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_A17
(482 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0269 - 16617292-16618852,16622763-16623562 35 0.039
06_01_1063 + 8602447-8602974 35 0.039
06_01_1062 + 8594333-8594860 34 0.052
04_03_1028 - 21827961-21827972,21828018-21828112,21828286-218283... 33 0.16
05_03_0307 + 12027505-12027565,12028300-12028925 30 0.85
02_05_0367 - 28331479-28332358,28332432-28332988,28333454-283336... 30 0.85
01_05_0199 - 19174971-19175105,19176302-19176628,19176813-191769... 30 0.85
08_01_0246 - 2028701-2029060,2029149-2030606,2030729-2031160 30 1.1
05_01_0580 + 5210002-5210170,5210466-5210524,5210883-5211668,521... 30 1.1
02_05_0103 - 25847224-25847331,25847785-25847862,25848487-258485... 30 1.1
02_01_0683 - 5067432-5067944 30 1.1
03_01_0096 + 763850-764027,764873-765189,765262-765433,765513-76... 29 2.0
03_01_0612 - 4501595-4501619,4501752-4501906,4502051-4502092,450... 29 2.6
01_07_0298 - 42586007-42589742,42590167-42590280,42590295-425904... 29 2.6
01_01_0139 + 1263356-1264273 28 3.4
12_02_0267 - 16588799-16588826,16589333-16590144 28 4.5
07_03_1503 + 27017933-27018063,27019668-27019727,27019996-270201... 28 4.5
06_02_0293 + 13849250-13849341,13850044-13850112,13850257-138502... 28 4.5
04_04_1231 - 31934745-31935125,31935230-31935325,31936215-319362... 28 4.5
02_05_0606 + 30314102-30314611 28 4.5
02_05_0418 + 28807763-28807777,28809216-28809242,28809588-288096... 28 4.5
08_01_0304 - 2502760-2502774,2502844-2502921,2503035-2503103,250... 27 6.0
03_02_0433 + 8398455-8399601,8399677-8399976,8400085-8401421 27 6.0
04_04_0802 - 28155281-28155725,28155750-28156081,28156164-281562... 27 7.9
03_01_0156 - 1250251-1250436,1250633-1250674,1250794-1250835,125... 27 7.9
>12_02_0269 - 16617292-16618852,16622763-16623562
Length = 786
Score = 34.7 bits (76), Expect = 0.039
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Frame = +1
Query: 67 LKDDEVISASINRKMISTPIMFENPVVHMQKVLSEVNHLREEESKLRHENLQLKEELLLV 246
+K +EV + ST F+N + H+++ LS +N L ++ + N+Q +E V
Sbjct: 15 VKLEEVCRYDLKEIQFSTEFDFKNNIWHLKEELSCMNALLQKLPNMEALNIQKRELRNKV 74
Query: 247 RQMA-IGEGRVAR-AHSYG 297
R++A E R+ R HS+G
Sbjct: 75 RELAYFVEDRIDRFMHSFG 93
>06_01_1063 + 8602447-8602974
Length = 175
Score = 34.7 bits (76), Expect = 0.039
Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +3
Query: 207 TRKSSIK-RGVTPRAPNGDRR-RPRGACPFLRTGEGATSRVDAMAGNRHRYGGHRYNRWE 380
TR+ ++ R RAP G RPR A P G GA R +AG HR+GG R E
Sbjct: 4 TRQPHLRGRAADGRAPRGSHSARPRAAKPARPAGGGA--RAPMVAGGGHRHGGAAAERGE 61
>06_01_1062 + 8594333-8594860
Length = 175
Score = 34.3 bits (75), Expect = 0.052
Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +3
Query: 207 TRKSSIK-RGVTPRAPNGDRR-RPRGACPFLRTGEGATSRVDAMAGNRHRYGGHRYNRWE 380
TR+ ++ R RAP G RPR A P G GA R +AG HR+GG R E
Sbjct: 4 TRQPHLRVRAADGRAPRGSHSARPRAAKPARLAGGGA--RAPMVAGGGHRHGGAAAEREE 61
>04_03_1028 -
21827961-21827972,21828018-21828112,21828286-21828361,
21828921-21829037,21829532-21829621,21830011-21830056,
21831407-21831502,21831599-21832008
Length = 313
Score = 32.7 bits (71), Expect = 0.16
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +3
Query: 168 RSKSSKRGGEQITTRKSSIKRGVTPRAPNGDRRR 269
RS+S +RG + +R S R +PR P+G RRR
Sbjct: 67 RSRSPRRGRSRSRSRSRSRGRSASPRYPDGKRRR 100
>05_03_0307 + 12027505-12027565,12028300-12028925
Length = 228
Score = 30.3 bits (65), Expect = 0.85
Identities = 21/52 (40%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +3
Query: 228 RGVTPRAPNGDRR-RPRGACPFLRTGEGATSRVDAMAGNRHRYGGHRYNRWE 380
R RAP RPR A P G GA R +AG HR+GG R E
Sbjct: 68 RAADGRAPRDSHSARPRAAKPARPAGGGA--RAPMVAGGGHRHGGAVAKRGE 117
>02_05_0367 -
28331479-28332358,28332432-28332988,28333454-28333671,
28333748-28333831,28334199-28334373,28334572-28334574
Length = 638
Score = 30.3 bits (65), Expect = 0.85
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 113 IIFLFIDADITSSSFNFVAASLGPFSATIFAL 18
+I +++ DI F F+AA +G S +FAL
Sbjct: 57 LILRYVEYDIALPQFGFIAAFMGELSGALFAL 88
>01_05_0199 -
19174971-19175105,19176302-19176628,19176813-19176915,
19178852-19178916,19179941-19180048,19180213-19180305,
19180395-19180442,19180801-19180899,19180980-19181096,
19181186-19181239,19181312-19181404,19181776-19181881,
19182050-19182084,19182173-19182259,19182385-19182462,
19182528-19182596,19182682-19182780,19183644-19183685,
19184498-19184570,19184654-19184982,19185070-19185127,
19185217-19185269,19186075-19186144,19186276-19186337,
19186452-19186540,19186906-19187011,19187110-19187178,
19187295-19187330
Length = 900
Score = 30.3 bits (65), Expect = 0.85
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 127 MFENPVVHMQKVLSEVNHLREEESKLRHENLQLKE 231
+FE VVH+++ L E LREEE + + + KE
Sbjct: 724 LFEECVVHLKERLKEKERLREEEKARKEKEREEKE 758
>08_01_0246 - 2028701-2029060,2029149-2030606,2030729-2031160
Length = 749
Score = 29.9 bits (64), Expect = 1.1
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +1
Query: 70 KDDEVISASINRKMISTPIMFENPVVHM--QKVLSEVNHLREEESKLRHENLQLKEEL 237
K + +S + + + F+N M Q E N LR E KLR EN++ KE L
Sbjct: 116 KQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENNALRAENEKLRAENMRYKEAL 173
>05_01_0580 +
5210002-5210170,5210466-5210524,5210883-5211668,
5211898-5212737
Length = 617
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +1
Query: 139 PVVHMQ-KVLSEVNHLREEESKLRHENLQLKEE 234
P+ +M+ K L E +HLR+E KL E QLK +
Sbjct: 333 PINNMEVKALQEADHLRQENDKLAKEVEQLKTD 365
>02_05_0103 -
25847224-25847331,25847785-25847862,25848487-25848528,
25848641-25848763,25848856-25848971,25849062-25849143,
25849233-25849303,25849632-25849689
Length = 225
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = +1
Query: 163 LSEVNHLREEESKLRHENLQLKEEL-LLVRQMAIGEG 270
L+ ++ L+EE+S +N++L+EEL LL RQM G
Sbjct: 166 LALISKLKEEKSSAIQQNMKLREELDLLRRQMGSQHG 202
>02_01_0683 - 5067432-5067944
Length = 170
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Frame = +1
Query: 154 QKVLSEVNHLREEESKLRHENLQLKEEL----LLVRQMAIGEGRVARAHSYGPEKVQ 312
Q++L E+NH+ + +++ EN QL+EE + +M + + VA A + P ++
Sbjct: 112 QRLLVELNHMISKHARIVRENSQLREEASDLQRKLSEMKMEDAEVAAAAAAAPRTLE 168
>03_01_0096 + 763850-764027,764873-765189,765262-765433,765513-765586,
765658-765835,765917-766026,766122-766221,766305-766391,
766505-766681,766847-767120,767201-767362,767450-767665,
767744-767781,768044-768102,768214-768339,768415-768540,
768642-768695,768789-768851,768924-768986,769079-769141,
769232-769732
Length = 1045
Score = 29.1 bits (62), Expect = 2.0
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Frame = +1
Query: 22 ANMVAEKGPNEAATKLKDDEVISASINRKM-------ISTPIMFENPVVHMQKVLSEVNH 180
+ + +EK NE KLK+ E + ++ +K+ + E+ + ++ L E H
Sbjct: 770 SQITSEKQQNELFGKLKEKEEMCTTLQQKIAEESEHKLRLQQQSESEIKELELKLKEQEH 829
Query: 181 LRE-EESKLRHENLQLKEE 234
R ESK++ L+LKE+
Sbjct: 830 HRSVAESKIKELELKLKEQ 848
>03_01_0612 -
4501595-4501619,4501752-4501906,4502051-4502092,
4502238-4502279,4502365-4502464,4502825-4502889,
4503140-4503217
Length = 168
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +1
Query: 154 QKVLSEVNHLREEESKLRHENLQLKEELLLVRQM 255
+K+L E++ L + +L ENL+LKE++ + +M
Sbjct: 83 KKILDEIDGLERKRMQLIEENLRLKEQVSRMSRM 116
>01_07_0298 - 42586007-42589742,42590167-42590280,42590295-42590437,
42591174-42591347
Length = 1388
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -2
Query: 292 RNGHAPRGLRRSPFGARGVTPLLIEDFRVV 203
R HAPRGL+ GARG L+ +D R V
Sbjct: 1330 RRVHAPRGLKGGRNGARGANYLVKKDGRRV 1359
>01_01_0139 + 1263356-1264273
Length = 305
Score = 28.3 bits (60), Expect = 3.4
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +3
Query: 204 TTRKSSIKRGVTPR-AP-NGDRRRPRGACPFLRTGEGATS 317
T K+S TP AP RRPR + P RT GATS
Sbjct: 89 TRAKASASASSTPALAPWRPSSRRPRSSAPTRRTAAGATS 128
>12_02_0267 - 16588799-16588826,16589333-16590144
Length = 279
Score = 27.9 bits (59), Expect = 4.5
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Frame = +1
Query: 67 LKDDEVISASINRKMISTPIMFENPVVHMQKVLSEVNHLREEESKLRHENLQLKEELLLV 246
+K +EV + ST F+N + ++++ LS +N L E+ + N+Q +E V
Sbjct: 15 VKLEEVCRYDLAEFQFSTQFDFKNNIWNLKEELSCMNALLEKLPDMEALNIQERELRNKV 74
Query: 247 RQMA-IGEGRVAR-AHSYG 297
R++A E ++ HS+G
Sbjct: 75 RELAYFVEDKIDMFMHSFG 93
>07_03_1503 + 27017933-27018063,27019668-27019727,27019996-27020101,
27020254-27020325,27021008-27021061,27021707-27021856,
27022206-27022547,27022651-27024684,27024706-27024947,
27025658-27026235,27026329-27028183,27028533-27028851,
27028980-27029417
Length = 2126
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = +3
Query: 150 YAKGIIRSKSSKRG----GEQITTRKSSIKRGVTPRAPNGDRRRPRGACP 287
+ K I R+ + + G G + + KSS ++G+ +PN RR P G P
Sbjct: 1796 HIKAIARNGTKQSGLVPSGTEAASNKSSSRKGIRGGSPNIGRRAPVGNDP 1845
>06_02_0293 +
13849250-13849341,13850044-13850112,13850257-13850266,
13850448-13850483,13850978-13851039,13851260-13851359,
13851428-13851469,13851756-13851839,13851955-13852095
Length = 211
Score = 27.9 bits (59), Expect = 4.5
Identities = 9/34 (26%), Positives = 23/34 (67%)
Frame = +1
Query: 160 VLSEVNHLREEESKLRHENLQLKEELLLVRQMAI 261
++ ++ LR++E+ + EN++L E ++RQ ++
Sbjct: 127 MVEQIQELRKKENIMHRENMELHREFNMIRQDSV 160
>04_04_1231 -
31934745-31935125,31935230-31935325,31936215-31936277,
31936393-31936593,31936738-31936839,31936972-31937430,
31937524-31937712,31938325-31938442,31939033-31939307,
31939853-31939930
Length = 653
Score = 27.9 bits (59), Expect = 4.5
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +1
Query: 70 KDDEVISASINRKMISTPIMFENPVVHM--QKVLSEVNHLREEESKLRHENLQLKEEL 237
K + +S + + + F+N M Q E + LR + KLR EN++ KE L
Sbjct: 129 KQRKELSRELGLEPLQVKFWFQNKRTQMKNQHERHENSQLRSDNEKLRAENMRYKEAL 186
>02_05_0606 + 30314102-30314611
Length = 169
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/35 (34%), Positives = 24/35 (68%), Gaps = 4/35 (11%)
Frame = +1
Query: 142 VVHMQ----KVLSEVNHLREEESKLRHENLQLKEE 234
VVH++ ++L ++NH+ + ++ HEN QL++E
Sbjct: 110 VVHLRSTNRQLLDQLNHVIRDCDRVTHENCQLRDE 144
>02_05_0418 +
28807763-28807777,28809216-28809242,28809588-28809621,
28809909-28810154,28810518-28810948,28812759-28813418
Length = 470
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = -2
Query: 307 PSPVRRNGHAPRGLRRSPFGARGVTP 230
P PV R G APRG F A G P
Sbjct: 355 PKPVPRRGGAPRGKAWESFAAAGKEP 380
>08_01_0304 -
2502760-2502774,2502844-2502921,2503035-2503103,
2503200-2503289,2503400-2503517,2505548-2505678,
2505756-2506025,2507175-2507308,2507635-2508088
Length = 452
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +3
Query: 153 AKGIIRSKSSKRGGEQITTRKSSIKRGVTPRAPNGDRRRPRGACPFLRTGEGATS 317
+KG+ S S+ GGE T++K+ P A + R R R R G T+
Sbjct: 8 SKGVAPSPSTGEGGESHTSKKNPAP-ATAPTAGSVTRSRARDTTERARASGGGTA 61
>03_02_0433 + 8398455-8399601,8399677-8399976,8400085-8401421
Length = 927
Score = 27.5 bits (58), Expect = 6.0
Identities = 18/81 (22%), Positives = 36/81 (44%)
Frame = +1
Query: 10 EAKSANMVAEKGPNEAATKLKDDEVISASINRKMISTPIMFENPVVHMQKVLSEVNHLRE 189
+ KSA K + ++L+++ +A + ++ + MQ + + E
Sbjct: 561 QLKSALQAERKALSALYSELEEERSAAAIATNQTMAMINRLQEEKAAMQMEALQYQRMME 620
Query: 190 EESKLRHENLQLKEELLLVRQ 252
E+S+ E LQL EL+ R+
Sbjct: 621 EQSEYDQEALQLLNELVTKRE 641
>04_04_0802 -
28155281-28155725,28155750-28156081,28156164-28156266,
28156347-28156528,28156617-28156800,28156872-28156960,
28157634-28157710,28157837-28157927,28158230-28158430
Length = 567
Score = 27.1 bits (57), Expect = 7.9
Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Frame = +3
Query: 189 GGEQITTRKSSI--KRGVTPRAPNGDRRRPRGACPFLRTGEGATSRVDAMAGNRHRY 353
GG +I R+ KR T A N DR R G CP G R + H Y
Sbjct: 289 GGGEIERRELGAIRKRWKTLHASNPDRERRHGKCPLTPEEVGLMLRALGFGKDVHIY 345
>03_01_0156 -
1250251-1250436,1250633-1250674,1250794-1250835,
1250935-1251034,1251125-1251186,1251333-1251356
Length = 151
Score = 27.1 bits (57), Expect = 7.9
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 157 KVLSE-VNHLREEESKLRHENLQLKEELLLVRQMAIGEGRVARAHSYGPEK 306
K+L E V LRE+E KLR +N +L+E+ Q + RA P++
Sbjct: 64 KLLEEQVAKLREKEMKLRKDNEELREK--CKNQPPLSAPLTVRAEDENPDR 112
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,636,503
Number of Sequences: 37544
Number of extensions: 322187
Number of successful extensions: 1171
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1170
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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