Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_A17
         (482 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    26   0.24 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.3  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   6.9  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   6.9  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   9.1  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   9.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.1  

>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 25.8 bits (54), Expect = 0.24
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -2

Query: 355 PYLWRLPAMAST-RLVAPSPVRRNGHAPRGLRRSP 254
           P   RLPA+ S   ++  SP++R G  P G    P
Sbjct: 373 PVTQRLPAVLSRIGIILASPLKREGGPPTGATTGP 407


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -1

Query: 374 TIIPMTAIPMAVASHGINATCCTFSGP 294
           T  PMT+    +  + +N+TC   + P
Sbjct: 329 TTSPMTSTKSTIVRNHLNSTCSVTNSP 355


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
          opsin protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 70 STLLQLHWDLFQQPYLHF 17
          S L++ HW  F  P  HF
Sbjct: 39 SDLVRPHWRAFPAPGKHF 56


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -1

Query: 428 PVCRGDVPGTNIHMKNFPTII 366
           P C  + P TNI  K +  ++
Sbjct: 46  PACGSETPLTNIEEKTYQCLL 66


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 8/25 (32%), Positives = 10/25 (40%)
 Frame = -2

Query: 82  LHHPSTLLQLHWDLFQQPYLHFSPP 8
           +H    LL + WD     Y    PP
Sbjct: 183 IHRKKVLLSVWWDYKGIVYFELLPP 207


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
          protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -2

Query: 70 STLLQLHWDLFQQPYLHF 17
          S L+  HW  F  P  HF
Sbjct: 39 SDLVHPHWRAFPAPGKHF 56


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -2

Query: 352 YLWRLPAMASTRLVAPSPVRRNGHAPRGLRRSPFGARGV 236
           Y+ R  A   +   +PSP  +         RSP G++G+
Sbjct: 730 YIMRGEASPRSPNASPSPAEQCASTTTITARSPQGSQGL 768


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,593
Number of Sequences: 438
Number of extensions: 2887
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)