Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_A15
(448 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc... 43 2e-05
SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces pombe... 36 0.003
SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway prote... 25 5.3
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar... 25 5.3
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|... 25 7.0
SPBC31F10.09c |nut2|med10|mediator complex subunit Med10|Schizos... 25 7.0
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c... 24 9.3
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 24 9.3
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 24 9.3
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po... 24 9.3
>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 192
Score = 43.2 bits (97), Expect = 2e-05
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Frame = +1
Query: 157 LGDLFPNF--TAVTTDG--KIEFYEWLGNSWGILFSHPSDFTPVCTTELARILKLLPDFT 324
+G P+F TAV +I+ ++ G W L +P DFT VC TE+ + F
Sbjct: 5 IGKPAPDFKGTAVVNGAFEEIKLADYKGK-WVFLGFYPLDFTFVCPTEIVAFSEAASKFA 63
Query: 325 KRNTKVIGLSCDSIESHIEWCN 390
+RN +VI S DS SH+ + N
Sbjct: 64 ERNAQVILTSTDSEYSHLAFIN 85
>SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 195
Score = 35.9 bits (79), Expect = 0.003
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +1
Query: 157 LGDLFPNFTAVTTDG-KIEFYEWLGNSWGILFSHPSDFTPVCTTELARILKLLPDFTKRN 333
+GD+ P+ T DG I + N ++F++P TP CT + P +
Sbjct: 48 VGDVIPDITLPDEDGTSIRLRDITANKGLVIFAYPKASTPGCTKQGCGFRDNYPKIQASD 107
Query: 334 TKVIGLSCDS 363
+V+GLS D+
Sbjct: 108 YEVLGLSFDT 117
>SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway protein
But1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 243
Score = 25.0 bits (52), Expect = 5.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 313 PDFTKRNTKVIGLSCDSIESHIEW 384
P NT VIG++ D++E+ +W
Sbjct: 135 PCLQSYNTDVIGITTDTVENICQW 158
>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
Gda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 556
Score = 25.0 bits (52), Expect = 5.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 227 EIHGESFSLIHPILHQFALLS 289
E+ G+S S+IHP LH A L+
Sbjct: 356 ELLGDSTSIIHPCLHLNASLT 376
>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 712
Score = 24.6 bits (51), Expect = 7.0
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +1
Query: 247 FSHPSDFTPVCTTELARILKL 309
+SHP DF P+ TE +++ +
Sbjct: 189 YSHPLDFCPIIDTEDQKVVAI 209
>SPBC31F10.09c |nut2|med10|mediator complex subunit
Med10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 138
Score = 24.6 bits (51), Expect = 7.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 256 PSDFTPVCTTELARILKLLPDFTKRNTKVI 345
PSD P L R LK LPD +++ +I
Sbjct: 34 PSDAIPESLDTLIRDLKSLPDISRKVNNLI 63
>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 24.2 bits (50), Expect = 9.3
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -2
Query: 447 NYWIWKYLIHIITCITFNVI 388
++W W Y I CI F +I
Sbjct: 202 SWWPWTYWTTAIVCIVFAII 221
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 24.2 bits (50), Expect = 9.3
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 234 MGNPFLSSIRFYTSLH 281
MG+PF+ S YTS+H
Sbjct: 51 MGSPFVQSPTSYTSMH 66
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 24.2 bits (50), Expect = 9.3
Identities = 6/16 (37%), Positives = 9/16 (56%)
Frame = +2
Query: 2 HEAFFDLQVSCNYCCW 49
H+ +V C +CCW
Sbjct: 1156 HDKLTSKKVPCTFCCW 1171
>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 220
Score = 24.2 bits (50), Expect = 9.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 238 GILFSHPSDFTPVCTTELARILKLLPDFTK 327
G L+S ++ VC ELA++L L D +
Sbjct: 4 GTLYSFKTNTRTVCLLELAKLLDLQVDLVE 33
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,945,476
Number of Sequences: 5004
Number of extensions: 38943
Number of successful extensions: 99
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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