Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_A15
(448 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957... 100 6e-22
07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080 99 8e-22
02_04_0116 + 19901546-19901737,19901825-19901899,19902034-199021... 52 3e-07
06_01_0671 - 4899611-4899829,4900870-4901448 42 2e-04
01_06_0946 + 33220910-33222221,33223373-33223734,33223863-332240... 29 1.7
03_06_0454 + 34044351-34044499,34045495-34045510,34045640-340458... 29 2.3
04_03_0910 + 20751014-20753437 28 3.9
10_01_0253 + 2661264-2661872,2662055-2662875,2662959-2663340 27 5.2
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 27 6.9
08_02_0916 - 22592039-22592196,22592361-22592781 27 9.1
02_01_0759 - 5628913-5630870,5631023-5631047 27 9.1
>07_03_1427 +
26495072-26495148,26495323-26495468,26495581-26495729,
26495829-26496224
Length = 255
Score = 100 bits (239), Expect = 6e-22
Identities = 41/89 (46%), Positives = 61/89 (68%)
Frame = +1
Query: 151 MLLGDLFPNFTAVTTDGKIEFYEWLGNSWGILFSHPSDFTPVCTTELARILKLLPDFTKR 330
+ +GD PN +T GKI ++++G+++ ILFSHP DFTPVCTTELA + +F KR
Sbjct: 39 LTIGDTVPNLELDSTHGKIRIHDFVGDTYVILFSHPGDFTPVCTTELAAMAGYAKEFDKR 98
Query: 331 NTKVIGLSCDSIESHIEWCNDIKSYASYN 417
K++G+SCD ++SH +W DI++Y N
Sbjct: 99 GVKLLGISCDDVQSHKDWIKDIEAYKPGN 127
>07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080
Length = 220
Score = 99 bits (238), Expect = 8e-22
Identities = 40/85 (47%), Positives = 61/85 (71%)
Frame = +1
Query: 151 MLLGDLFPNFTAVTTDGKIEFYEWLGNSWGILFSHPSDFTPVCTTELARILKLLPDFTKR 330
+ LGD+ P+ TT GKI ++++G+++ I+FSHP+DFTPVCTTEL+ + +F KR
Sbjct: 4 LTLGDVVPDLELDTTHGKIRLHDFVGDAYVIIFSHPADFTPVCTTELSEMAGYAGEFDKR 63
Query: 331 NTKVIGLSCDSIESHIEWCNDIKSY 405
K++G SCD +ESH +W DI++Y
Sbjct: 64 GVKLLGFSCDDVESHKDWIKDIEAY 88
>02_04_0116 +
19901546-19901737,19901825-19901899,19902034-19902115,
19902219-19902298,19903279-19903482,19903625-19903750,
19903872-19903985,19904802-19904918
Length = 329
Score = 51.6 bits (118), Expect = 3e-07
Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Frame = +1
Query: 154 LLGDLFPNFTAVTTDGK----IEFYEWLGNSWGILFSHPSDFTPVCTTELARILKLLPDF 321
L+G+ P+F A + ++ +++G + ILF +P DFT VC TE+ +F
Sbjct: 69 LVGNKAPDFDAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYDEF 128
Query: 322 TKRNTKVIGLSCDSIESHIEWCNDIKSY--ASYNVDEVFP 435
K NT+++G+S DS+ W SY A Y+ D P
Sbjct: 129 EKLNTEILGVSIDSV-----WSRAFTSYFIALYSYDMSIP 163
>06_01_0671 - 4899611-4899829,4900870-4901448
Length = 265
Score = 41.9 bits (94), Expect = 2e-04
Identities = 23/75 (30%), Positives = 33/75 (44%)
Frame = +1
Query: 160 GDLFPNFTAVTTDGKIEFYEWLGNSWGILFSHPSDFTPVCTTELARILKLLPDFTKRNTK 339
G PNFT DG+ +++ +P+D TP CT + F K +
Sbjct: 121 GSAAPNFTLRDQDGRAVSLSKFKGRPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAE 180
Query: 340 VIGLSCDSIESHIEW 384
VIG+S D SH E+
Sbjct: 181 VIGISGDDAASHKEF 195
>01_06_0946 +
33220910-33222221,33223373-33223734,33223863-33224073,
33224174-33224411,33224492-33224642,33224733-33224997,
33231775-33231820,33232167-33232815,33232883-33233384,
33235023-33235360,33235466-33235676,33235769-33235992,
33236042-33236115,33236147-33236234,33236316-33236612
Length = 1655
Score = 29.1 bits (62), Expect = 1.7
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 9/71 (12%)
Frame = +1
Query: 166 LFPNFTAVTTDGKIEFYEWLGNSWGILFSHPSD---------FTPVCTTELARILKLLPD 318
L F A T G+++ + W+ +W + +P+D C T + LP
Sbjct: 259 LLSRFVADATAGQVQRFVWINGAWSSFWYYPTDPCDGYAKCGAFGYCDTSTPTLCSCLPG 318
Query: 319 FTKRNTKVIGL 351
F R+ + GL
Sbjct: 319 FQPRSPQQWGL 329
>03_06_0454 +
34044351-34044499,34045495-34045510,34045640-34045862,
34045969-34046092,34046168-34046294,34046821-34046882,
34046972-34048023,34048167-34048556,34048667-34052628,
34052710-34052796,34052885-34053004,34053096-34053152
Length = 2122
Score = 28.7 bits (61), Expect = 2.3
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 232 SWGILFSHPSDFTPVCTTELARILKLLPDFTKRNTKVIGLSCDSIESHIE 381
S G + S P +CT +L L+P T NT GL D I H++
Sbjct: 665 SSGKVASFPDMDPGMCTKDLELDNVLVPKETVANTPPTGLGTDHIHEHVD 714
>04_03_0910 + 20751014-20753437
Length = 807
Score = 27.9 bits (59), Expect = 3.9
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 163 DLFPNFTAVTTDGKIEFYEWLGNS--WGILFSHPSDFTPVCTT 285
+ P +T + G+ + WL ++ W +F+HP+D V T
Sbjct: 263 ETIPLYTVLEVTGQRKALAWLNDTQGWQAVFTHPNDQCEVAAT 305
>10_01_0253 + 2661264-2661872,2662055-2662875,2662959-2663340
Length = 603
Score = 27.5 bits (58), Expect = 5.2
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +2
Query: 278 ALLSWHGYSNFCLISPRETPKLLVYHVILSNHI 376
++L WH ++FC IS R T ++ + +SN++
Sbjct: 377 SVLLWHLATDFCFISKRCTNEVATRSIEISNYM 409
>07_01_0242 +
1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 27.1 bits (57), Expect = 6.9
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 218 NGSEIHGESFSLIHPILHQFALLSWHGYSNFCLISP 325
NG+++H S S + IL + LS HG + F +SP
Sbjct: 91 NGNDVHSFSVSFVFAILSIYPNLSSHGMAFF--VSP 124
>08_02_0916 - 22592039-22592196,22592361-22592781
Length = 192
Score = 26.6 bits (56), Expect = 9.1
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -2
Query: 288 LSSANWCKIGWMREK 244
L++ NWC+ W+REK
Sbjct: 38 LTARNWCRRPWLREK 52
>02_01_0759 - 5628913-5630870,5631023-5631047
Length = 660
Score = 26.6 bits (56), Expect = 9.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 271 PVCTTELARILKLLPDFTKRNTKVIGLSCDSIE 369
P+C + +K PDFT + V+G+ C +E
Sbjct: 467 PLCKSLQFLTIKDCPDFTDASLAVVGMVCPYLE 499
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,487,894
Number of Sequences: 37544
Number of extensions: 213867
Number of successful extensions: 494
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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