Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_A14
         (333 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    25   4.0  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    24   7.0  
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    24   7.0  
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    24   7.0  
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    24   7.0  
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ...    23   9.2  

>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 52  DLITVKNFEPVYFNSGADALEAALNMESFV 141
           DLI  + FEP+    G D L  +L + +FV
Sbjct: 176 DLINPEWFEPIVMILGDDDLNVSLAVSNFV 205


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -1

Query: 153 DALCYERFHVQSSLQSIGPAIEVYRFEVFDGDKIADVRNSSPIM 22
           DA   + F++ S +  I   I    FE+ DG  +   R+ S I+
Sbjct: 230 DAALPKEFYLDSVITPIYRFIHAQLFEILDGKYVRRERDHSQII 273


>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 141 YERFHVQSSLQSIGPAIEVYR 79
           YER HV  SL S     ++YR
Sbjct: 297 YERIHVNFSLSSYQQDYDIYR 317


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 256 DYHLVDYLSGEFLEEQYRGQRDLAGK 333
           DYHL++ L      E Y+ QR   GK
Sbjct: 35  DYHLMEKLGEGTFGEVYKSQRRKDGK 60


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 238 REVKFNDYHLVDYLSGEFLEEQ 303
           R V   DYH    LSGE L+ +
Sbjct: 162 RSVTLKDYHRQKLLSGEILDAE 183


>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 137 NDSMFRAASKASAPLLKYTGSKFLTVIRSLTSEIAL 30
           NDS+  A SKA   LL+   SK  + +  L+    L
Sbjct: 106 NDSILSAKSKAKPELLRTLTSKSSSAVDWLSERFGL 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,236,158
Number of Sequences: 5004
Number of extensions: 19519
Number of successful extensions: 59
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)