Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_A14
         (333 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0231 - 10696096-10696315,10696348-10696697                       31   0.17 
01_05_0198 + 19170217-19171701                                         27   3.7  
12_02_0552 + 20333744-20334114,20334241-20335942                       27   4.9  
11_08_0104 + 28378448-28378821,28378974-28380702                       27   4.9  
11_04_0289 - 15804766-15804977,15805742-15805862,15806541-158067...    27   4.9  
05_06_0286 + 26932395-26933155,26934287-26934407,26934496-269347...    27   4.9  
02_05_0016 - 25004075-25005821,25006394-25006527                       27   4.9  
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32...    26   8.5  

>05_03_0231 - 10696096-10696315,10696348-10696697
          Length = 189

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = +3

Query: 60  HRQKLRTCILQ*RGRCFGGCSEHGIVRNKEHQRRH*RMREGSQTQGKQQQR 212
           H Q L +C++  R R  G  + H   R++  +RR  R+R  +Q  G+Q++R
Sbjct: 93  HGQMLSSCLMACRRRSAGAVATH---RSQPRRRRATRLRVKAQPSGQQRRR 140


>01_05_0198 + 19170217-19171701
          Length = 494

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 325 RGHVGLCIAPPGIRQIDSRQDGS 257
           RGH+GL  A PG+R +++   GS
Sbjct: 43  RGHLGLVRAHPGLRDLNAALAGS 65


>12_02_0552 + 20333744-20334114,20334241-20335942
          Length = 690

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = -1

Query: 162 DASDALCYERFHVQSSLQSIGPAIEVYRFEVFDGDKIADVRNSSPIM 22
           D    L  +R+ ++++ Q +GP +EV RF     ++  +  N +P++
Sbjct: 331 DRLTKLRQDRYAIRTAPQWLGPQVEVIRFATKSIEREINSVNDNPVI 377


>11_08_0104 + 28378448-28378821,28378974-28380702
          Length = 700

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = -1

Query: 162 DASDALCYERFHVQSSLQSIGPAIEVYRFEVFDGDKIADVRNSSPIM 22
           D    L  +R+ ++++ Q +GP +EV RF     ++  +  N +P++
Sbjct: 337 DRLTKLKQDRYAIRTAPQWLGPQVEVIRFATKSIEREINSVNDNPVI 383


>11_04_0289 -
           15804766-15804977,15805742-15805862,15806541-15806776,
           15807639-15807766,15807873-15807910,15808041-15808129,
           15808669-15808774,15811395-15811580
          Length = 371

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +3

Query: 96  RGRCFGGCSEH-GIVRNKEHQRRH*RMREGSQTQGKQQQRSE 218
           RG C  G S+    +  K++  RH   RE     GKQ ++ E
Sbjct: 261 RGPCTTGASDSCQWLEGKKNNMRHDSQREWKDRMGKQSEKKE 302


>05_06_0286 +
           26932395-26933155,26934287-26934407,26934496-26934772,
           26934934-26935094
          Length = 439

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 6/29 (20%)
 Frame = +3

Query: 96  RGRCFGGCSE------HGIVRNKEHQRRH 164
           +G CFGGC E      + ++RN++++R H
Sbjct: 382 QGSCFGGCHEINRRIDYVMIRNQDYERCH 410


>02_05_0016 - 25004075-25005821,25006394-25006527
          Length = 626

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = -1

Query: 138 ERFHVQSSLQSIGPAIEVYRFEVFDGDKIADVRNSSPIM 22
           +R+ +++S Q +GP IEV RF     ++  +  N +P++
Sbjct: 259 DRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLI 297


>12_01_0039 -
           319871-319914,320021-320084,320198-320263,320397-320458,
           321211-321298,321401-321461,321542-321625,322332-322630
          Length = 255

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 229 LKSREVKFNDYHLVDYLSGEFLEEQ 303
           L S   + ND  L D++  EFLEEQ
Sbjct: 196 LHSVASRCNDPQLTDFVESEFLEEQ 220


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,507,725
Number of Sequences: 37544
Number of extensions: 138990
Number of successful extensions: 370
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)