Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_A14
         (333 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ...    27   2.5  
AF106592-2|AAK21364.1|  170|Caenorhabditis elegans Ferritin prot...    27   4.3  
U40936-1|AAL65777.2|  770|Caenorhabditis elegans Hypothetical pr...    26   5.7  
AF016447-16|AAG24016.1|  170|Caenorhabditis elegans Ferritin pro...    26   5.7  
U80023-4|AAG24038.1|  318|Caenorhabditis elegans Serpentine rece...    26   7.5  
U40935-1|AAA81687.1| 1131|Caenorhabditis elegans Hypothetical pr...    26   7.5  
U40414-3|AAA81406.1|  321|Caenorhabditis elegans Hypothetical pr...    26   7.5  

>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
            protein C08G9.2 protein.
          Length = 2224

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 147  LCYERFHVQSS-LQSIGPAIEVYRFEVFDGDKIADVRNSSPIM 22
            +C  + H QSS L  I PAI     EV +   I D R +SP++
Sbjct: 1652 ICCHQKHTQSSVLNLISPAIVAAAPEVIEATTIVD-RGNSPVV 1693


>AF106592-2|AAK21364.1|  170|Caenorhabditis elegans Ferritin protein
           2 protein.
          Length = 170

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 229 LKSREVKFNDYHLVDYLSGEFLEEQYRGQRDLA 327
           L S     ND HL D++  ++L+EQ +   + A
Sbjct: 113 LHSTAGNHNDAHLTDFIEEKYLDEQVKSINEFA 145


>U40936-1|AAL65777.2|  770|Caenorhabditis elegans Hypothetical
           protein C13E3.1 protein.
          Length = 770

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = -1

Query: 123 QSSLQSIGPAIE--VYRFEVFDGDKIADVRN 37
           +S+L  +G AIE  VY   V+ G+KIA+ R+
Sbjct: 706 ESNLTFVGEAIEKDVYMVAVYRGEKIAEDRD 736


>AF016447-16|AAG24016.1|  170|Caenorhabditis elegans Ferritin
           protein 1 protein.
          Length = 170

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 253 NDYHLVDYLSGEFLEEQYRGQRDLA 327
           ND HL +Y+  ++LEEQ     + A
Sbjct: 121 NDAHLTNYIQEKYLEEQVHSINEFA 145


>U80023-4|AAG24038.1|  318|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 25 protein.
          Length = 318

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 267 KMVVVEFDLPGFKFLGLRIFVVVF 196
           K+   +  LP F FLG+ +FV +F
Sbjct: 223 KVATFKLILPSFIFLGITVFVAMF 246


>U40935-1|AAA81687.1| 1131|Caenorhabditis elegans Hypothetical
           protein F31E3.4 protein.
          Length = 1131

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 161 TPLMLFVTNDSMFRAASKASAPLLKYT 81
           T  ++F  +D+M RA ++   P+ K+T
Sbjct: 78  TESLIFTLSDTMLRATTRQGIPVAKFT 104


>U40414-3|AAA81406.1|  321|Caenorhabditis elegans Hypothetical
           protein F53B3.6 protein.
          Length = 321

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 208 CCCFPWVWDP 179
           CCCF +VW P
Sbjct: 296 CCCFKFVWPP 305


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,888,973
Number of Sequences: 27780
Number of extensions: 112102
Number of successful extensions: 323
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)