Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_A13
         (362 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    27   1.2  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    26   2.1  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    25   3.6  
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    24   6.3  
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    24   6.3  

>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 8/24 (33%), Positives = 18/24 (75%)
 Frame = +3

Query: 111 QQWIDYYRSIGHMEEAEAIEQQVK 182
           ++W+ Y  S+G++E+A  + ++VK
Sbjct: 759 KEWLQYLASVGYLEKAIDLAEKVK 782


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
 Frame = -3

Query: 315 PVRWPARR---ERRVLRPTAGPR---DPGSRARPATRTLPPV 208
           P R+P++R   E   L P  G     +PG+R  PA   LPP+
Sbjct: 130 PDRYPSKRGFKESFALLPGGGNHFAYEPGTRENPAVPFLPPL 171


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 129 SNRSTAASSPVALSPDLSPLEAAVVVVQTVGASAGCSP 16
           SN+  + SSP AL  D +  +     +    A A CSP
Sbjct: 371 SNKKDSDSSPTALVMDFTATDRISKPLDPTEAPADCSP 408


>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -3

Query: 132 DSNRSTAASSPVALSPDLSPLEAAVVVVQTVGASAGCSPKRP 7
           +SN   A+ +P+ L+P  S  E    + Q   ++  C+ K+P
Sbjct: 211 ESNILLASEAPLFLTPAKSKAEMIQFMNQLADSAPPCTRKKP 252


>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 96  QPDYSQQWIDYYRSIGHMEEAEAIEQQV 179
           +P Y Q+W+DY  + G +  A A+ Q++
Sbjct: 545 KPIY-QKWLDYESNYGDLNAAIALSQRM 571


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 928,425
Number of Sequences: 5004
Number of extensions: 12320
Number of successful extensions: 48
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)