Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_A13
         (362 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00047-8|AAP68924.1|  510|Caenorhabditis elegans Hypothetical pr...    54   2e-08
U00047-7|AAA50693.2|  557|Caenorhabditis elegans Hypothetical pr...    54   2e-08
Z73969-19|CAJ43440.1|  548|Caenorhabditis elegans Hypothetical p...    54   4e-08
Z73969-2|CAA98233.1|  611|Caenorhabditis elegans Hypothetical pr...    54   4e-08
Z73969-1|CAA98232.1|  589|Caenorhabditis elegans Hypothetical pr...    54   4e-08
AC024089-1|AAK09071.1|  641|Caenorhabditis elegans Hypothetical ...    36   0.011
Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical pr...    31   0.25 
U88174-6|AAB42272.1|  680|Caenorhabditis elegans Hypothetical pr...    31   0.25 
AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein.      31   0.25 
Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical pr...    29   0.75 
AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily a...    28   2.3  
U58753-8|AAC24439.1|  633|Caenorhabditis elegans Hypothetical pr...    27   3.0  
U58753-7|AAC24433.1|  581|Caenorhabditis elegans Hypothetical pr...    27   3.0  
Z92826-9|CAD90172.1|  701|Caenorhabditis elegans Hypothetical pr...    27   4.0  
U42436-2|AAL02470.2|  552|Caenorhabditis elegans Hypothetical pr...    27   4.0  
AL132860-33|CAB60507.2|  701|Caenorhabditis elegans Hypothetical...    27   4.0  
Z81458-4|CAB03824.1|  623|Caenorhabditis elegans Hypothetical pr...    27   5.3  
AL032651-1|CAB60580.1|  681|Caenorhabditis elegans Hypothetical ...    27   5.3  
AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical ...    27   5.3  
Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical pr...    26   7.0  
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    26   9.3  

>U00047-8|AAP68924.1|  510|Caenorhabditis elegans Hypothetical
           protein ZK418.9b protein.
          Length = 510

 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 21/41 (51%), Positives = 30/41 (73%)
 Frame = +3

Query: 75  AINPVTGQPDYSQQWIDYYRSIGHMEEAEAIEQQVKQSSGS 197
           A+NP TG PDYS QW  YYRSIG +E+A  +E Q++++  +
Sbjct: 450 AVNPATGAPDYSAQWAAYYRSIGLVEQAAMVESQMRRNQSN 490


>U00047-7|AAA50693.2|  557|Caenorhabditis elegans Hypothetical
           protein ZK418.9a protein.
          Length = 557

 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 21/41 (51%), Positives = 30/41 (73%)
 Frame = +3

Query: 75  AINPVTGQPDYSQQWIDYYRSIGHMEEAEAIEQQVKQSSGS 197
           A+NP TG PDYS QW  YYRSIG +E+A  +E Q++++  +
Sbjct: 497 AVNPATGAPDYSAQWAAYYRSIGLVEQAAMVESQMRRNQSN 537


>Z73969-19|CAJ43440.1|  548|Caenorhabditis elegans Hypothetical
           protein C12D8.1c protein.
          Length = 548

 Score = 53.6 bits (123), Expect = 4e-08
 Identities = 20/36 (55%), Positives = 31/36 (86%)
 Frame = +3

Query: 78  INPVTGQPDYSQQWIDYYRSIGHMEEAEAIEQQVKQ 185
           ++PVTG+ DYS QW++YY+SIG  ++AEA+E Q+K+
Sbjct: 454 VDPVTGEQDYSAQWMEYYKSIGAHDKAEAVEAQMKK 489


>Z73969-2|CAA98233.1|  611|Caenorhabditis elegans Hypothetical
           protein C12D8.1b protein.
          Length = 611

 Score = 53.6 bits (123), Expect = 4e-08
 Identities = 20/36 (55%), Positives = 31/36 (86%)
 Frame = +3

Query: 78  INPVTGQPDYSQQWIDYYRSIGHMEEAEAIEQQVKQ 185
           ++PVTG+ DYS QW++YY+SIG  ++AEA+E Q+K+
Sbjct: 517 VDPVTGEQDYSAQWMEYYKSIGAHDKAEAVEAQMKK 552


>Z73969-1|CAA98232.1|  589|Caenorhabditis elegans Hypothetical
           protein C12D8.1a protein.
          Length = 589

 Score = 53.6 bits (123), Expect = 4e-08
 Identities = 20/36 (55%), Positives = 31/36 (86%)
 Frame = +3

Query: 78  INPVTGQPDYSQQWIDYYRSIGHMEEAEAIEQQVKQ 185
           ++PVTG+ DYS QW++YY+SIG  ++AEA+E Q+K+
Sbjct: 495 VDPVTGEQDYSAQWMEYYKSIGAHDKAEAVEAQMKK 530


>AC024089-1|AAK09071.1|  641|Caenorhabditis elegans Hypothetical
           protein C36E6.1b protein.
          Length = 641

 Score = 35.5 bits (78), Expect = 0.011
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 93  GQPDYSQQWIDYYRSIGHMEEAEAIEQQV 179
           G  DYS QW++YY  IG    A+A+ +++
Sbjct: 591 GDADYSAQWLEYYIHIGDQASADAVRERI 619


>Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical
           protein F22B5.7 protein.
          Length = 1415

 Score = 31.1 bits (67), Expect = 0.25
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +2

Query: 26  PALAPTVCTTTTAASSGDKSGDRATGLLAA 115
           P +APT  T + +A+SGD SG  AT ++++
Sbjct: 251 PPVAPTSSTPSASAASGDPSGGTATAVVSS 280


>U88174-6|AAB42272.1|  680|Caenorhabditis elegans Hypothetical
           protein M01A10.1 protein.
          Length = 680

 Score = 31.1 bits (67), Expect = 0.25
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 96  QPDYSQQWIDYYRSIGHMEEAEAIEQQVKQ 185
           + DYS QW+ YY   G    AEA+  ++ +
Sbjct: 637 ETDYSAQWLQYYTQNGDEAAAEAVRNRIAE 666


>AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein.
          Length = 1415

 Score = 31.1 bits (67), Expect = 0.25
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +2

Query: 26  PALAPTVCTTTTAASSGDKSGDRATGLLAA 115
           P +APT  T + +A+SGD SG  AT ++++
Sbjct: 251 PPVAPTSSTPSASAASGDPSGGTATAVVSS 280


>Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical
           protein F45B8.3 protein.
          Length = 241

 Score = 29.5 bits (63), Expect = 0.75
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 357 PCCGSTPPTARCSPPVRWPA 298
           PCCG +P  A C PP   PA
Sbjct: 98  PCCGPSPVPAPCCPPPPAPA 117


>AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 218, isoform a protein.
          Length = 1136

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = -3

Query: 345 STPPTARCSPPVRWPARRERRVLRPTAGPRDPGS---RARPATRTLPPVVVSYY 193
           S PP     PP +   +R    L+PT  PR   +   RAR  T   PP V + +
Sbjct: 160 SPPPPLPSVPPSKERIKRIPSYLKPTPAPRSMSATLPRARLKTPPPPPPVTNQF 213


>U58753-8|AAC24439.1|  633|Caenorhabditis elegans Hypothetical
           protein W03B1.9 protein.
          Length = 633

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 18/48 (37%), Positives = 21/48 (43%)
 Frame = -3

Query: 348 GSTPPTARCSPPVRWPARRERRVLRPTAGPRDPGSRARPATRTLPPVV 205
           G  PP     PP   P RR R   RP     + G  AR  TR+ PP +
Sbjct: 442 GRVPPP----PPPPPPRRRSRSRDRPRLVFSNIGGSARRRTRSAPPAI 485


>U58753-7|AAC24433.1|  581|Caenorhabditis elegans Hypothetical
           protein W03B1.5 protein.
          Length = 581

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 18/48 (37%), Positives = 21/48 (43%)
 Frame = -3

Query: 348 GSTPPTARCSPPVRWPARRERRVLRPTAGPRDPGSRARPATRTLPPVV 205
           G  PP     PP   P RR R   RP     + G  AR  TR+ PP +
Sbjct: 390 GRVPPP----PPPPPPRRRSRSRDRPRLVFSNIGGSARRRTRSAPPAI 433


>Z92826-9|CAD90172.1|  701|Caenorhabditis elegans Hypothetical
           protein Y56A3A.1a protein.
          Length = 701

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 24/112 (21%), Positives = 39/112 (34%)
 Frame = -3

Query: 345 STPPTARCSPPVRWPARRERRVLRPTAGPRDPGSRARPATRTLPPVVVSYYPMIXXXXXX 166
           S P     +P ++  A ++  V RP   P  P S A P      P  + Y  +       
Sbjct: 307 SMPSPHAVTPELKRLASKDSNVDRPRTPPVTPASAAPP------PPGIPYNSVAAGRSTT 360

Query: 165 XXXXXXXXXLNDSNRSTAASSPVALSPDLSPLEAAVVVVQTVGASAGCSPKR 10
                     N    S A ++P+A +  + P  AA      +  S    P++
Sbjct: 361 TPVPSTPISANSPAPSLAQAAPIAAASPVFPPAAAAASKPVLAQSVSEMPQK 412


>U42436-2|AAL02470.2|  552|Caenorhabditis elegans Hypothetical
           protein C49H3.6a protein.
          Length = 552

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -3

Query: 117 TAASSPVALSPDLSPLEAAVVVVQTVGAS 31
           T  S+ + LSPDL  LEAA+  +  V AS
Sbjct: 444 TNTSAVMPLSPDLEQLEAAIQSMNVVTAS 472


>AL132860-33|CAB60507.2|  701|Caenorhabditis elegans Hypothetical
           protein Y56A3A.1a protein.
          Length = 701

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 24/112 (21%), Positives = 39/112 (34%)
 Frame = -3

Query: 345 STPPTARCSPPVRWPARRERRVLRPTAGPRDPGSRARPATRTLPPVVVSYYPMIXXXXXX 166
           S P     +P ++  A ++  V RP   P  P S A P      P  + Y  +       
Sbjct: 307 SMPSPHAVTPELKRLASKDSNVDRPRTPPVTPASAAPP------PPGIPYNSVAAGRSTT 360

Query: 165 XXXXXXXXXLNDSNRSTAASSPVALSPDLSPLEAAVVVVQTVGASAGCSPKR 10
                     N    S A ++P+A +  + P  AA      +  S    P++
Sbjct: 361 TPVPSTPISANSPAPSLAQAAPIAAASPVFPPAAAAASKPVLAQSVSEMPQK 412


>Z81458-4|CAB03824.1|  623|Caenorhabditis elegans Hypothetical
           protein C03E10.5 protein.
          Length = 623

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 8   GRLGLQPALAPTVCTTTTAASSGDKS 85
           G+LG  PA  P+  +TT+ ASS   S
Sbjct: 141 GKLGKCPATTPSTISTTSGASSSTAS 166


>AL032651-1|CAB60580.1|  681|Caenorhabditis elegans Hypothetical
           protein Y6D1A.1 protein.
          Length = 681

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 342 TPPTARCSPPVRWPARRERRVLRPTAGPRDPGSRAR 235
           +PP  R  PP+R P R E        G R   SR++
Sbjct: 69  SPPRVRREPPMRSPGRNEVMSPERRYGTRSASSRSQ 104


>AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical
           protein H20J04.2 protein.
          Length = 1427

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
 Frame = -3

Query: 357 PCCGSTPPTARCSPPVRWPAR-RERRVLRPTAGPRDPGSRARPATRTLPP 211
           P C  TP   R   P    A   ER+  +P    RDP +  RP  R  PP
Sbjct: 260 PICPQTPALQRGRAPNTLKAGDHERKEKKPKKEERDPAAPPRPRGR--PP 307


>Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical
           protein T10B10.1 protein.
          Length = 428

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 6/63 (9%)
 Frame = -3

Query: 360 CPCC----GSTPPTARCSPPVRWP--ARRERRVLRPTAGPRDPGSRARPATRTLPPVVVS 199
           CPC       TPP++  S P   P  +        P A    P +RA PAT   PP    
Sbjct: 274 CPCPQRQDDRTPPSSGTSAPQPPPRGSTAAPGTRAPPATRAPPATRAPPATTRAPPATTR 333

Query: 198 YYP 190
             P
Sbjct: 334 PAP 336


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 342 TPPTARCSPPVRWPARRERR 283
           +PP  R SPP R   RR+RR
Sbjct: 234 SPPRRRGSPPARGGDRRDRR 253


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,456,799
Number of Sequences: 27780
Number of extensions: 83975
Number of successful extensions: 431
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)