Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_A11
(546 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390... 211 2e-55
05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493... 209 1e-54
06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687 31 0.009
04_03_0563 - 17195605-17196681 30 1.4
01_06_1684 + 39151412-39151702,39152410-39152548,39152926-391530... 29 2.4
06_03_0444 + 20864183-20864436,20864831-20865818 28 5.6
01_01_1084 - 8521796-8522389,8522503-8522983,8523084-8523190 28 5.6
07_01_0763 + 5854986-5855000,5855266-5855775,5855899-5856159 27 7.4
07_01_0760 - 5844349-5844401,5844521-5844665,5844782-5845297,584... 27 7.4
10_08_0133 + 15100049-15101836,15103344-15103382 27 9.8
04_04_1201 - 31697707-31697765,31697863-31698013,31698100-31699260 27 9.8
01_05_0293 - 20532559-20532572,20532573-20532798,20532926-205339... 27 9.8
>03_05_0228 -
22137771-22138016,22138109-22138306,22138852-22139018,
22139129-22139132
Length = 204
Score = 211 bits (516), Expect = 2e-55
Identities = 96/173 (55%), Positives = 119/173 (68%)
Frame = +2
Query: 26 MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQCYV 205
MGAY+Y+ EL+R+K SDVMRF+ R+R W+YRQ + R RPTRPDKARRLGY+AKQ YV
Sbjct: 1 MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYV 60
Query: 206 IFRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYW 385
++R+ YGKPK G+ QLK RN +S+AEE NSYW
Sbjct: 61 VYRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYW 120
Query: 386 VAQDSSYKYFEVILIDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRG 544
V +DS+YKYFE+IL+D +H AIR DP+INW+ VHKHRE+RGLTSAGK RG
Sbjct: 121 VNEDSTYKYFEIILVDVAHSAIRNDPRINWLCKPVHKHRELRGLTSAGKKYRG 173
>05_03_0257 +
11145558-11145876,11148181-11148347,11149114-11149311,
11149405-11149650
Length = 309
Score = 209 bits (511), Expect = 1e-54
Identities = 95/172 (55%), Positives = 118/172 (68%)
Frame = +2
Query: 29 GAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQCYVI 208
GAY+Y+ EL+R+K SDVMRF+ R+R W+YRQ + R RPTRPDKARRLGY+AKQ YV+
Sbjct: 107 GAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYVV 166
Query: 209 FRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYWV 388
+R+ YGKPK G+ QLK RN +S+AEE NSYWV
Sbjct: 167 YRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWV 226
Query: 389 AQDSSYKYFEVILIDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRG 544
+DS+YKYFE+IL+D +H AIR DP+INW+ VHKHRE+RGLTSAGK RG
Sbjct: 227 NEDSTYKYFEIILVDVAHSAIRNDPRINWLCKPVHKHRELRGLTSAGKKYRG 278
>06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687
Length = 353
Score = 31.1 bits (67), Expect(2) = 0.009
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +2
Query: 413 FEVILIDPSHKAIRRDPK 466
FE+IL+D +H AIR DPK
Sbjct: 299 FEIILVDVAHSAIRDDPK 316
Score = 25.0 bits (52), Expect(2) = 0.009
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 266 YGKPKSHGVNQLKPTRN 316
Y KPK G+ QLK RN
Sbjct: 276 YSKPKHQGITQLKFQRN 292
>04_03_0563 - 17195605-17196681
Length = 358
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 129 VCTALPGPRGQTRREGLDTVPSNVMLSSESACAVVAV 239
V ALP PR T+P++V++ S S C +V V
Sbjct: 147 VVEALPSPRIMAVHMPFSTLPASVVVDSSSGCKIVYV 183
>01_06_1684 +
39151412-39151702,39152410-39152548,39152926-39153040,
39153232-39153332,39153688-39153809,39153885-39153976,
39155288-39155393,39155477-39155631,39155904-39156031,
39156349-39156479,39157171-39157268,39157371-39158162,
39158472-39158523
Length = 773
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = -3
Query: 313 ASGFQLVDTMALGFAVGSSLGHWAFTATTAHADSEDNITLLGTVSKPSRLVWPR 152
AS +LV + GFA G++ A A AH DS+ ++ L + L W R
Sbjct: 55 ASAARLVASAVAGFAQGAAAAAIAAGAIGAHVDSDRDLRHLSRLRYKRWLWWTR 108
>06_03_0444 + 20864183-20864436,20864831-20865818
Length = 413
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Frame = +1
Query: 79 YAISLAYKSVAISPVDSYAPRSQAHEARQGEKAWI----PCQAMLCYLQNPRAPWW 234
Y I+ + + AI+ + Y R + Q A+I QA+ C L N WW
Sbjct: 76 YTITASISAAAINKSNCYHWRGHGTDCSQNTSAYIIGFGVLQALFCQLPNFHQLWW 131
>01_01_1084 - 8521796-8522389,8522503-8522983,8523084-8523190
Length = 393
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -3
Query: 298 LVDTMALGFAVGSSLGHWAFTATTAHADSEDNITLLGTVSKPSRLVWPRG 149
LV +G V S GHW ++ + AD+E +L + + +RL+ RG
Sbjct: 303 LVFHSRMGLCVQISRGHWLWSVWESIADAELAADILHSSATSTRLIPIRG 352
>07_01_0763 + 5854986-5855000,5855266-5855775,5855899-5856159
Length = 261
Score = 27.5 bits (58), Expect = 7.4
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = -3
Query: 295 VDTMALGFAVGSSLGHWAFTATTAHADSE--DNITLLGTVSKPSRLVWPRGPGSA 137
V M G G S+G + AH ++ DN+ L GT + W G GSA
Sbjct: 88 VKNMVCGPGHGISIGSLGDHNSEAHVNNVTVDNVRLYGTTNGARIKTWQGGKGSA 142
>07_01_0760 -
5844349-5844401,5844521-5844665,5844782-5845297,
5845405-5845596,5845686-5845817,5845926-5846069
Length = 393
Score = 27.5 bits (58), Expect = 7.4
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = -3
Query: 295 VDTMALGFAVGSSLGHWAFTATTAHADSE--DNITLLGTVSKPSRLVWPRGPGSA 137
V M G G S+G + AH ++ DN+ L GT + W G GSA
Sbjct: 241 VKNMVCGPGHGISIGSLGDHNSEAHVNNVTVDNVRLYGTANGARIKTWQGGKGSA 295
>10_08_0133 + 15100049-15101836,15103344-15103382
Length = 608
Score = 27.1 bits (57), Expect = 9.8
Identities = 23/76 (30%), Positives = 32/76 (42%)
Frame = -3
Query: 337 LLSNRLQVASGFQLVDTMALGFAVGSSLGHWAFTATTAHADSEDNITLLGTVSKPSRLVW 158
LLS+ A+G + LG G+SLG AF T+ A D++ + W
Sbjct: 387 LLSHLCSRATGITSPLAVLLGVLAGASLGAVAFFTTSPDAPPADHLAAWLAAGFVMSVAW 446
Query: 157 PRGPGSAVHTSQLAIL 110
AV T LA+L
Sbjct: 447 ----AYAVATELLALL 458
>04_04_1201 - 31697707-31697765,31697863-31698013,31698100-31699260
Length = 456
Score = 27.1 bits (57), Expect = 9.8
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +2
Query: 38 RYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPR---PTRPDKAR 172
R +++ +L V + RI WQ Q+ R H +PR PT P K R
Sbjct: 71 RALRDRLAGELGQVRALIARIDTWQQGQVKR-HGSPRRDLPTPPAKLR 117
>01_05_0293 -
20532559-20532572,20532573-20532798,20532926-20533960,
20534670-20534996
Length = 533
Score = 27.1 bits (57), Expect = 9.8
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 119 QLTRMHRAPRPTRPD 163
QLTR+H P P RPD
Sbjct: 73 QLTRLHPPPEPPRPD 87
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,945,503
Number of Sequences: 37544
Number of extensions: 292524
Number of successful extensions: 821
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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