Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_A10
(284 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb... 27 0.40
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 26 0.92
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p... 25 1.6
SPBC19F8.02 |||nuclear distribution protein NUDC |Schizosaccharo... 25 1.6
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 25 2.1
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce... 25 2.1
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 24 3.7
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce... 24 3.7
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 23 6.5
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 23 6.5
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 23 6.5
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 23 6.5
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 23 8.5
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 23 8.5
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc... 23 8.5
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 23 8.5
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF... 23 8.5
SPCC5E4.10c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 23 8.5
>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 27.5 bits (58), Expect = 0.40
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 129 GEWTDEQRDRKPTEFEKENPNILLLDK 209
G+ T + +D+K EKE P++ +LDK
Sbjct: 329 GDGTSKVKDKKAKNNEKEVPDLAILDK 355
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 26.2 bits (55), Expect = 0.92
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 144 EQRDRKPTEFEKENPNILLL 203
EQRD++ K+NPN+L +
Sbjct: 270 EQRDKEALRIAKQNPNVLAM 289
>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 25.4 bits (53), Expect = 1.6
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 111 EWGAGEGEWTDEQRDRKPTEFEKENPNILL 200
+W DE++DR E E E NI+L
Sbjct: 3 KWEIANEVCVDEKQDRDAEEIEDEGKNIIL 32
>SPBC19F8.02 |||nuclear distribution protein NUDC
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 25.4 bits (53), Expect = 1.6
Identities = 11/49 (22%), Positives = 23/49 (46%)
Frame = +3
Query: 39 AKHDTEVEMIKAREQIDVIGEKVGEWGAGEGEWTDEQRDRKPTEFEKEN 185
+ HD ++++ ++ + G + E WT E+++R EK N
Sbjct: 40 SNHDLKIQINVPERKVLLSGPLEKQINLDESTWTVEEQERLVIHLEKSN 88
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 25.0 bits (52), Expect = 2.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 196 SCWTRTDSLRTCELITSYLEEKKKP 270
+C T T + TC LI Y EK+ P
Sbjct: 153 TCHTDTHTSSTCPLIWRYYVEKEHP 177
>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 25.0 bits (52), Expect = 2.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 126 EGEWTDEQRDRKPTEFEKENPNILLLD 206
EGEW D + TE E E+ ++LD
Sbjct: 380 EGEWLDPNDQVQSTELEDEDQVSVVLD 406
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 24.2 bits (50), Expect = 3.7
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 132 EWTDEQRDRKPTEFEKENPNILLLDKDGQFEN 227
EW D R+ + F + PN+L+ D+D +F N
Sbjct: 1852 EWYDGLRNIR---FGIQRPNLLIYDEDKKFIN 1880
>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 357
Score = 24.2 bits (50), Expect = 3.7
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +3
Query: 33 KFAKHDTEVEMIKAREQIDVIGEKVGEWGAGEGEWTDEQRD-RKPTEFEKENPNILLLDK 209
K A+ + + E KARE+ + EW EW + RK + +++ +
Sbjct: 166 KKAREEDKAEWKKAREEDKEWRNSMDEWRKSMDEWRKSMDEWRKSMDEWRKSTDEWRKST 225
Query: 210 DGQFENM 230
D + EN+
Sbjct: 226 DERLENL 232
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 23.4 bits (48), Expect = 6.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 85 ICSLAFIISTSVSCLANLSNMFAYI 11
IC + I S S++CL + S M +I
Sbjct: 979 ICKVREIASLSLTCLLDCSKMTTFI 1003
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 23.4 bits (48), Expect = 6.5
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -1
Query: 92 HVNLL-SRFYHLHLRIMFGELVEHVRVHL 9
H++LL S HL + GEL+ + VHL
Sbjct: 699 HIDLLFSNMKHLFFQPCEGELIVLIHVHL 727
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 23.4 bits (48), Expect = 6.5
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +3
Query: 135 WTDEQRDRKPTEFEKENPNILLLDKDGQFENM*TNYKLFGREK 263
WTD RDRK + + + ++ T+YK +EK
Sbjct: 29 WTDRARDRKRQKRNSNESSKSTVKRNSGTNGASTDYKNSQKEK 71
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 23.4 bits (48), Expect = 6.5
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 81 QIDVIGEKVGEWGAGEG 131
QI ++G K E+G EG
Sbjct: 1201 QISIVGSKFNEYGLSEG 1217
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 23.0 bits (47), Expect = 8.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 138 TDEQRDRKPTEFEKENPNIL 197
T E D P+ + K+NPN+L
Sbjct: 1192 TLEWEDTFPSVYSKDNPNLL 1211
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 23.0 bits (47), Expect = 8.5
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 193 YSCWTRTDSLRTCELIT 243
+SC++ T LR C L+T
Sbjct: 1018 FSCFSATFQLRLCSLLT 1034
>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 703
Score = 23.0 bits (47), Expect = 8.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 21 NMFDKFAKHDTEVEMIKAREQIDV 92
++FDK K E K RE+ID+
Sbjct: 28 DLFDKLQKEYKESLATKPREEIDI 51
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 23.0 bits (47), Expect = 8.5
Identities = 11/35 (31%), Positives = 14/35 (40%)
Frame = +1
Query: 112 SGEPERESGLTSRETGNPQSSRRKTRTYSCWTRTD 216
+GE E S + GNP+ RR T D
Sbjct: 464 AGEGSEELDFASVQRGNPEMQRRAQMVIDACTTMD 498
>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
XPF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 892
Score = 23.0 bits (47), Expect = 8.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 124 ERESGLTSRETGNPQSSRRKTR 189
ERE+ T+ G P S RR+ R
Sbjct: 451 EREASNTTSRKGVPPSKRRRVR 472
>SPCC5E4.10c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 101
Score = 23.0 bits (47), Expect = 8.5
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +1
Query: 130 ESGLTSRETGNPQSSRRK 183
E L++R+T NP+S RR+
Sbjct: 44 EKLLSNRKTKNPESDRRR 61
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,128,217
Number of Sequences: 5004
Number of extensions: 18188
Number of successful extensions: 73
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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