Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_A10
(284 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0316 + 2565704-2566134,2566682-2566845,2566989-2567152,256... 30 0.25
11_06_0399 - 23129476-23129745,23131040-23131121,23131216-231317... 30 0.33
03_03_0097 + 14386262-14386532,14387696-14387919,14388057-143883... 27 1.8
07_01_0873 - 7257016-7257957,7260083-7260262 27 3.1
03_02_0025 + 5084003-5084303,5084449-5084639,5084793-5084873,508... 27 3.1
08_02_1431 + 27057706-27057900,27058701-27058815,27059123-270591... 26 4.1
12_02_0138 + 14168422-14168682 26 5.4
06_03_1404 - 29928792-29929040,29929147-29929551,29930130-299302... 26 5.4
04_04_1487 - 33919654-33920399,33920676-33920817 26 5.4
04_01_0428 + 5634020-5634232,5634336-5634542,5634911-5635125,563... 26 5.4
01_06_1625 + 38729803-38731115,38731202-38731391,38731472-387315... 25 7.1
08_02_0204 - 14253258-14253383,14253685-14253878,14254029-142547... 25 9.4
03_06_0697 + 35607040-35607417 25 9.4
>01_01_0316 +
2565704-2566134,2566682-2566845,2566989-2567152,
2567594-2567720,2568347-2568450
Length = 329
Score = 30.3 bits (65), Expect = 0.25
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 87 DVIGEKVGEWGAGEGEWTDEQRDRKPTEFEKENPNI 194
D IG VGE A +G W + + R + KENP I
Sbjct: 103 DAIGGDVGEGAASQGCWLEPELGRFAFQSYKENPLI 138
>11_06_0399 -
23129476-23129745,23131040-23131121,23131216-23131711,
23132135-23132699,23132825-23132893
Length = 493
Score = 29.9 bits (64), Expect = 0.33
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +3
Query: 9 QMYANMFDKFAKHDTEVEMIKAREQIDVIGEKVGE--WGAGEGEWTDEQRDRKPTEFEKE 182
Q A + + +K + E E+ K+ + VGE GAG+ W D+ R + +++E
Sbjct: 322 QFDAMLINWSSKEEEEEEVSKSLRHFEASVAAVGEKRGGAGDCRWEDDDRAKSCIRYQRE 381
Query: 183 NPNI 194
I
Sbjct: 382 EAKI 385
>03_03_0097 +
14386262-14386532,14387696-14387919,14388057-14388307,
14388393-14388771,14388958-14389389
Length = 518
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 132 EWTDEQRDRKPTEFEKENPNILLLDK 209
EW D R+ E KENPN +L K
Sbjct: 347 EWQDRLREEVLRECRKENPNADMLSK 372
>07_01_0873 - 7257016-7257957,7260083-7260262
Length = 373
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 72 AREQIDVIGEKVGEWGAGEGEWTDEQR 152
AR+ D +GE GAGEGE + R
Sbjct: 12 ARKAADAVGEAAAAAGAGEGESPEAAR 38
>03_02_0025 +
5084003-5084303,5084449-5084639,5084793-5084873,
5084972-5085319,5085409-5086293
Length = 601
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +3
Query: 42 KHDTEVEMIKAREQIDVIGEKVGEWGAGEGEWTDEQRDRKPTEFEKE 182
+ T + E+++ E+ E G G+GE E+ +R+ E E+E
Sbjct: 450 RESTIMACTSCAEELERKAEEEEEGGGGKGEKEREEEERRQREKEEE 496
>08_02_1431 +
27057706-27057900,27058701-27058815,27059123-27059170,
27059272-27059524,27059689-27059776,27059883-27059948,
27060335-27060403,27060492-27060597,27060639-27060793,
27061208-27061537
Length = 474
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 135 WTDEQRDRKPTEFEKENPNILLLDKD 212
WT +R+R +E KEN N +L+ D
Sbjct: 244 WTSYRRNRLVSEVAKENFNTILIHPD 269
>12_02_0138 + 14168422-14168682
Length = 86
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Frame = +1
Query: 97 GRRWESGEPE--RESGLTSRETGNPQSSRRK 183
GRRW+ GE + E G R G RRK
Sbjct: 42 GRRWDGGEDQLVEEDGEGERARGRAARMRRK 72
>06_03_1404 -
29928792-29929040,29929147-29929551,29930130-29930280,
29930363-29930501,29930578-29930743,29930826-29931041,
29931142-29931323,29931412-29931538,29931974-29932112,
29932227-29932353,29932501-29932612,29932704-29932784,
29933330-29933483,29933569-29933689,29934003-29934045,
29934356-29934460
Length = 838
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +2
Query: 149 ERQETHRVREGKPEHTLVGQGRTV*EHVN*LQVIWKRKKNHI 274
E +ET E KP+ V + T E +N ++ IW R +
Sbjct: 342 EEEETEESEEKKPKTKTVKETTTEWELLNDVKAIWLRSPKEV 383
>04_04_1487 - 33919654-33920399,33920676-33920817
Length = 295
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +3
Query: 69 KAREQIDVIGEKVGEWGAG 125
+ARE D GEKVGE G G
Sbjct: 97 RARELADAGGEKVGEGGDG 115
>04_01_0428 +
5634020-5634232,5634336-5634542,5634911-5635125,
5637880-5638119,5639112-5639310,5639954-5640319
Length = 479
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +1
Query: 136 GLTSRETGNPQSSRRKTRTYSCWTRTDSLRTCELITSY 249
GLTSR P S R+ T C T TD++ + I Y
Sbjct: 194 GLTSRAGVVPISPRQDTIGPICRTVTDAVHVLDAIVGY 231
>01_06_1625 +
38729803-38731115,38731202-38731391,38731472-38731504,
38731582-38732199,38732304-38733011
Length = 953
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 39 AKHDTEVEMIKAREQIDVIGEKVGEWGAGEGEW 137
+K D ++ + QI V+G K GE+ EG+W
Sbjct: 839 SKSDAAYDVFQQAYQI-VVGLKEGEYPVEEGQW 870
>08_02_0204 -
14253258-14253383,14253685-14253878,14254029-14254743,
14254811-14254837,14258779-14258838,14263174-14264844,
14267402-14267518,14267593-14267763,14270248-14270346,
14271684-14271770,14272392-14272475,14272929-14273068,
14274414-14274494,14275492-14275680,14275986-14276022
Length = 1265
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 33 KFAKHDTEVEMIKAREQIDVIGEKVGEWGAGEGEW 137
+F D + E R + + G KV E+G+G G W
Sbjct: 66 RFDVDDLDKEADMLRVLVLLGGRKVWEFGSGNGAW 100
>03_06_0697 + 35607040-35607417
Length = 125
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +3
Query: 72 AREQIDVIGEKVGEWGAGEGEWTDEQR 152
A + +G++ G WG G G W + +R
Sbjct: 26 AESAVFTVGDR-GGWGMGAGSWANGKR 51
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,422,973
Number of Sequences: 37544
Number of extensions: 122429
Number of successful extensions: 463
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 291966432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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