Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_A09
         (386 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    33   0.016
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    27   1.0  
SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces po...    27   1.4  
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    26   2.4  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    25   4.1  
SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa...    25   4.1  
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    25   5.5  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    24   7.2  

>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 33.1 bits (72), Expect = 0.016
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 48  VRYKVYSVLWLVRKCLYVFVIV*QYCFPFW 137
           V +K Y+  W+ R CL +F+ +  Y F FW
Sbjct: 270 VTWKAYAGHWIARVCLLIFLPILIYAFTFW 299


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 233 ELSTCLYYHKKHKTQKRSDARNTVIDLSYLII 138
           ELS C Y HKK  T   +D  +T+ID S  ++
Sbjct: 553 ELSFCKYIHKKQPTNVSTDF-STMIDSSLQLL 583


>SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 235

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -1

Query: 377 TTLQLKWTS*LHIEDADFFPRFVWGTLLYDL-LILKGIIVADQFLT 243
           T  QL+W     +    FFP FV   LLY + L L  +I  D F++
Sbjct: 125 TDYQLEWNYCFDVHCNSFFPSFV---LLYVIQLFLLPVITRDNFIS 167


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -1

Query: 329 DFFPRFVWGTLLYDLL--ILKGIIVADQFLTY 240
           ++ PR+ W  L+YD +  I  G +V  Q ++Y
Sbjct: 124 NWLPRYNWNWLVYDFIAGITVGCVVVPQGMSY 155


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +1

Query: 217 KHVESSRLYVKN*SATMMPFKINKSYNNVPHTNRGKKSASSI*SHEVHF 363
           KHVESS     +  + ++P  I++S   V  TN  K  +S++ S  V F
Sbjct: 113 KHVESSLASGSDVRSLLIPGSIDQSVLKVAATN-NKDDSSAVKSANVSF 160


>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -3

Query: 189 KTIRRPKYRNRPILLNYTKMGNNTVKLSQKHKGIFVLTTARCTL 58
           K +  PK+ + PILL Y  +         K+ G + L+   C L
Sbjct: 241 KFLLTPKFASSPILLKYGYVCITAFVARMKYYGAWELSDGACIL 284


>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -2

Query: 85  RTNHSTLYTLYRTNC-QGKFDFQYILL 8
           R NHSTLY L R     GK D+   +L
Sbjct: 406 RPNHSTLYELIRLIAYSGKLDYMKDIL 432


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 149  KIGLLRYFGRLIVFEFYASYGNTNTLKVLDYML 247
            K+  L +    I+F+   S+G  + LKV+ YM+
Sbjct: 964  KLNELPFLENWILFQCLLSFGGDDFLKVVAYMV 996


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,609,417
Number of Sequences: 5004
Number of extensions: 31493
Number of successful extensions: 62
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)