Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_A09
         (386 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0913 + 12344096-12344125,12344284-12345970,12346243-123465...    29   1.7  
01_01_1209 - 9738501-9738516,9738703-9739161,9739389-9739608,973...    28   2.2  
05_04_0126 + 18252594-18256922                                         27   3.9  
04_04_0797 - 28137656-28137836,28138082-28138207,28138364-28138422     27   3.9  
04_04_0089 - 22724971-22725035,22725403-22725466,22725602-227256...    27   6.9  
02_04_0613 + 24392238-24393550,24394585-24394687,24395153-24395257     27   6.9  

>03_02_0913 + 12344096-12344125,12344284-12345970,12346243-12346573,
            12346712-12347567,12347760-12347883,12348469-12348688,
            12348771-12349229,12349318-12349519
          Length = 1302

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 14/67 (20%), Positives = 33/67 (49%)
 Frame = -1

Query: 308  WGTLLYDLLILKGIIVADQFLTYNLELSTCLYYHKKHKTQKRSDARNTVIDLSYLIIPKW 129
            W ++ Y L+      V    L  +L  +T L+Y + ++T  +++  N  +    ++   W
Sbjct: 1099 WSSVFYSLIYTSIPTVVVGILDKDLSHNTLLHYPRLYETGLQNEGYNLTLFWITMLDTLW 1158

Query: 128  ETILLNY 108
            ++++L Y
Sbjct: 1159 QSLVLFY 1165


>01_01_1209 - 9738501-9738516,9738703-9739161,9739389-9739608,
            9739708-9739831,9739927-9740635,9741826-9742132,
            9742213-9743704
          Length = 1108

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 15/67 (22%), Positives = 32/67 (47%)
 Frame = -1

Query: 308  WGTLLYDLLILKGIIVADQFLTYNLELSTCLYYHKKHKTQKRSDARNTVIDLSYLIIPKW 129
            W +LLY +L      +    L  +L   T L Y K + + +R +  N  + +  ++   W
Sbjct: 967  WSSLLYTVLYTSLPTIVVGILDKDLSKETLLAYPKLYGSGQRDEKYNVNLFVLNMLEALW 1026

Query: 128  ETILLNY 108
            +++++ Y
Sbjct: 1027 QSLVVFY 1033


>05_04_0126 + 18252594-18256922
          Length = 1442

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +2

Query: 209 GNTNTLKVLDYMLKIDPQQ*CLLKLISHIIMSPTQTAEKNQRL 337
           GN N+    D ++K DP + C+      +  +P ++ E+ +RL
Sbjct: 635 GNNNSQIFRDILVKCDPNEFCMRMFAHAMYANPNRSYEELRRL 677


>04_04_0797 - 28137656-28137836,28138082-28138207,28138364-28138422
          Length = 121

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +2

Query: 2   RHEENILKIKFPLTISTI*S-VQRAVVSTKMPLCFCDSLTVLFPIL 136
           RHE +I+ +K P  I+       R+ +   M LC C S   LFP L
Sbjct: 21  RHEFSIMWVKDPTMIAVRWRRAFRSAIQKHMALCNCQSKWPLFPRL 66


>04_04_0089 -
           22724971-22725035,22725403-22725466,22725602-22725688,
           22726775-22726789,22736269-22736685,22738235-22738473,
           22739673-22740223,22740440-22740540
          Length = 512

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -1

Query: 188 KRSDARNTVIDLSYLIIPKWETILLNYHKNIKAFSY*PQHA--VHFISY 48
           K  +    V+ L YL    W T++L +  +I A S   QH    H++SY
Sbjct: 434 KFKEVSEKVLALHYLYKAPWATLILLFVTSIGAKSCNKQHECHCHYLSY 482


>02_04_0613 + 24392238-24393550,24394585-24394687,24395153-24395257
          Length = 506

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -1

Query: 239 NLELSTCLYYHKKHKTQKRSDARNTVIDLSYLIIPKWETILLNYHKNIKA 90
           N ELST +  H      +  D  N  +  +YL+I +++  + +  KNI A
Sbjct: 30  NAELSTKITQHSPLYNPQPQDFPNEELYRNYLVIQRFKKTITSDPKNITA 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,216,322
Number of Sequences: 37544
Number of extensions: 157597
Number of successful extensions: 275
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)