Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_A09
         (386 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   2.8  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   3.7  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   6.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   6.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   6.5  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -3

Query: 183 IRRPKYRNRPI-LLNYTKMGNNTVKLSQKHKGI 88
           +R  K   RP  L N TK G N +KL +   G+
Sbjct: 222 LRHTKIWLRPDWLFNLTKYGKNQIKLLEIIHGL 254


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 212 NTNTLKVLDYMLKIDP 259
           N NT K  DY + +DP
Sbjct: 139 NNNTNKYKDYYIWVDP 154


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 317 RFVWGTLLYDLLILKGIIVADQFLTYNLELST 222
           RF W   +  LL+   II+      +N +LST
Sbjct: 88  RFYWDLCMLLLLVANLIILPVAISFFNDDLST 119


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 317 RFVWGTLLYDLLILKGIIVADQFLTYNLELST 222
           RF W   +  LL+   II+      +N +LST
Sbjct: 88  RFYWDLCMLLLLVANLIILPVAISFFNDDLST 119


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 317 RFVWGTLLYDLLILKGIIVADQFLTYNLELST 222
           RF W   +  LL+   II+      +N +LST
Sbjct: 88  RFYWDLCMLLLLVANLIILPVAISFFNDDLST 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,467
Number of Sequences: 438
Number of extensions: 2515
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9391092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)