Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_A08
(434 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 177 6e-46
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 177 8e-46
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1... 28 0.54
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces... 26 2.2
SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1||... 25 3.8
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 25 3.8
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 3.8
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar... 25 5.0
SPBC146.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 6.7
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 24 8.8
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c... 24 8.8
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 24 8.8
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 24 8.8
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 177 bits (431), Expect = 6e-46
Identities = 80/126 (63%), Positives = 97/126 (76%)
Frame = +2
Query: 8 GKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRS 187
GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+
Sbjct: 81 GKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMSVRT 140
Query: 188 SDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYEREEFEKLRDAGRFANDGCNVKYR 367
D +A IEALRR ++KFPG+Q+I VSKKWGF++Y R+E+ + R G DGC K+
Sbjct: 141 KDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFL 200
Query: 368 PEHGPL 385
+ G L
Sbjct: 201 NKRGSL 206
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 177 bits (430), Expect = 8e-46
Identities = 80/126 (63%), Positives = 97/126 (76%)
Frame = +2
Query: 8 GKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRS 187
GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+
Sbjct: 81 GKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRT 140
Query: 188 SDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYEREEFEKLRDAGRFANDGCNVKYR 367
D +A IEALRR ++KFPG+Q+I VSKKWGF++Y R+E+ + R G DGC K+
Sbjct: 141 KDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFL 200
Query: 368 PEHGPL 385
+ G L
Sbjct: 201 NKRGSL 206
>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 28.3 bits (60), Expect = 0.54
Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
Frame = +2
Query: 38 LHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGT----VARVRIGQPIMSVRSSDRWKA 205
L P R+ C G GK +G AR+ IG+ + + K
Sbjct: 100 LKPIKAARVYTRF-CCNVPVCVKGNETRMGKGKGAFEYWAARIPIGRVLFEIGGDGMRKE 158
Query: 206 QVIEALRRAKFKFPGRQKIYVSK 274
AL++A F PG+ +I V +
Sbjct: 159 LAEHALKQAAFHLPGKYEIIVKQ 181
>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 711
Score = 26.2 bits (55), Expect = 2.2
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -1
Query: 434 KYFTHYVVHFGISSRHRGVHALGGT*RCIHR*QN 333
KY H+ VH H + ++ G RCI + N
Sbjct: 589 KYIHHFWVHTWFDKTHPDIESITGIIRCIDKVPN 622
>SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 224
Score = 25.4 bits (53), Expect = 3.8
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -3
Query: 141 VPWGFPNAPRIPV 103
+ W FPNAP IPV
Sbjct: 46 IKWIFPNAPSIPV 58
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 25.4 bits (53), Expect = 3.8
Identities = 10/29 (34%), Positives = 21/29 (72%)
Frame = +3
Query: 300 VRNLRSYVMLDVLLTMDATSSTAQSMDPS 386
V +LRS+++ + L+++ ++SST + PS
Sbjct: 176 VASLRSHILFNALISILSSSSTLHKLYPS 204
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 3.8
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 11 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 115
+D H+RM ++ FH IN MLS + D + MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890
>SPAC22E12.17c |glo3||ARF GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 486
Score = 25.0 bits (52), Expect = 5.0
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -2
Query: 178 RHNGLSNTHTRYCALGFPERTTHPSLEPISSSA 80
RH G+S +++ C L + +T LE + S A
Sbjct: 94 RHGGVSLLNSKDCRLKYSSKTAKQYLEKLKSLA 126
>SPBC146.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 263
Score = 24.6 bits (51), Expect = 6.7
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = -2
Query: 283 APLLRYIDLLATRELELSTTQSLNDLCLPTVT*AYRHNGLSNTHTRYCALGFPERTTHPS 104
+PLL I L R + S ++ LN + + GLS+ H+RY + P R +
Sbjct: 92 SPLLSPISPLKLRFHKYSVSKQLNSV-------GKQGFGLSSNHSRYASPSSPARLARGA 144
Query: 103 L-EPISSS 83
L E +S+S
Sbjct: 145 LGEELSNS 152
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 24.2 bits (50), Expect = 8.8
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = -2
Query: 151 TRYCALGFPERTTHPSLEPISSSARQHFIDAD 56
T + +P+R T PSL+ + + H + D
Sbjct: 226 THFAPYYYPQRATSPSLKQVPTYLGTHVLQQD 257
>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 594
Score = 24.2 bits (50), Expect = 8.8
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +1
Query: 355 RQVPPRAWTPRCLE 396
R VP +AW RC+E
Sbjct: 171 RNVPEKAWANRCVE 184
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 24.2 bits (50), Expect = 8.8
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -2
Query: 262 DLLATRELELSTTQSLNDLCLPTVT*AYRHNGLSNTHT-RYCALGFPE 122
DL+A R+ S +S+N + LP V+ A + SNT++ Y G+ E
Sbjct: 2766 DLIAWRQ---SVFKSINKVFLPLVSIAQQSTNKSNTNSVSYLYRGYHE 2810
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 24.2 bits (50), Expect = 8.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 296 EREEFEKLRDAGRFANDGCNVKY 364
+R+ ++L D +F D CNV+Y
Sbjct: 148 QRDHLDRLCDQVKFYLDQCNVEY 170
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,956,898
Number of Sequences: 5004
Number of extensions: 38989
Number of successful extensions: 121
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -