Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_A08
         (434 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...   182   1e-46
Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical pr...    31   0.48 
Z81055-1|CAB02889.1|  618|Caenorhabditis elegans Hypothetical pr...    28   2.5  
Z66515-10|CAI70410.1|  510|Caenorhabditis elegans Hypothetical p...    28   3.4  
Z66515-9|CAA91346.1|  519|Caenorhabditis elegans Hypothetical pr...    28   3.4  
M77697-7|AAA27902.6|  903|Caenorhabditis elegans Hypothetical pr...    27   4.4  
L15313-8|AAA28196.1|  469|Caenorhabditis elegans Hypothetical pr...    27   4.4  
AF067214-6|AAC17005.2|  457|Caenorhabditis elegans Hypothetical ...    27   4.4  
Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical p...    27   5.9  
Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical pr...    27   5.9  
X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.     27   5.9  
AC006777-5|AAK72311.1|  247|Caenorhabditis elegans Hypothetical ...    27   7.8  

>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score =  182 bits (442), Expect = 1e-46
 Identities = 83/129 (64%), Positives = 99/129 (76%)
 Frame = +2

Query: 8   GKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRS 187
           GKD FH+R+R HPFHV RINKMLSCAGADRLQTGMRGA+GKPQG VARV IG  + S+R 
Sbjct: 81  GKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYGKPQGLVARVDIGDILFSMRI 140

Query: 188 SDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYEREEFEKLRDAGRFANDGCNVKYR 367
            +      IEA RRAKFKFPGRQ I  S+KWGFTK++RE++E++R  GR  +DG  V+ +
Sbjct: 141 KEGNVKHAIEAFRRAKFKFPGRQIIVSSRKWGFTKWDREDYERMRAEGRLRSDGVGVQLQ 200

Query: 368 PEHGPLDVW 394
            EHGPL  W
Sbjct: 201 REHGPLTKW 209


>Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical
           protein C09G5.2 protein.
          Length = 476

 Score = 30.7 bits (66), Expect = 0.48
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -3

Query: 132 GFPNAPRIPVWSLSAPA 82
           GFPN+P +P+W LS P+
Sbjct: 232 GFPNSPLLPIWLLSYPS 248


>Z81055-1|CAB02889.1|  618|Caenorhabditis elegans Hypothetical
           protein F01G10.1 protein.
          Length = 618

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +2

Query: 113 RGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIE--ALRRAKFKFPGRQK 259
           R   GKP   +A+   G+ I  + + D W  + +    +   K +F G QK
Sbjct: 228 RSTKGKPTAIIAKTLKGKGIEGIENEDNWHGKPVPEGTVNAIKARFHGSQK 278


>Z66515-10|CAI70410.1|  510|Caenorhabditis elegans Hypothetical
           protein R53.1b protein.
          Length = 510

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -2

Query: 145 YCALGFPERTT-HPSLEPISSSARQHFIDA 59
           Y +LG  + T  HP+L  +SS  R+H++ A
Sbjct: 465 YTSLGGRDNTVKHPALRIVSSDGREHYLPA 494


>Z66515-9|CAA91346.1|  519|Caenorhabditis elegans Hypothetical
           protein R53.1a protein.
          Length = 519

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -2

Query: 145 YCALGFPERTT-HPSLEPISSSARQHFIDA 59
           Y +LG  + T  HP+L  +SS  R+H++ A
Sbjct: 474 YTSLGGRDNTVKHPALRIVSSDGREHYLPA 503


>M77697-7|AAA27902.6|  903|Caenorhabditis elegans Hypothetical
           protein B0303.11 protein.
          Length = 903

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 19/65 (29%), Positives = 32/65 (49%)
 Frame = -2

Query: 274 LRYIDLLATRELELSTTQSLNDLCLPTVT*AYRHNGLSNTHTRYCALGFPERTTHPSLEP 95
           +R + LL+T ++ +S   S + LC+PT         L N +     L  PE  + P+L  
Sbjct: 344 IRCLLLLSTVQILVSAIGSYDILCIPTTVFYLFAYALFNFYVFLVKLSDPEIPSPPTLLS 403

Query: 94  ISSSA 80
           ++ SA
Sbjct: 404 LAISA 408


>L15313-8|AAA28196.1|  469|Caenorhabditis elegans Hypothetical
           protein ZK353.8 protein.
          Length = 469

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +2

Query: 167 PIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYEREEFEKLRDA 328
           PI S  +S     ++ E + RAK     +++    KK    K+ +EE  K R+A
Sbjct: 155 PIQSSSTSQEMTRELAEKVARAKALLEQKKQKDAEKKREADKHVKEEMTKAREA 208


>AF067214-6|AAC17005.2|  457|Caenorhabditis elegans Hypothetical
           protein F56C3.2 protein.
          Length = 457

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 218 ALRRAKFKFPGRQKIYVSKKWGFTKYEREEFE 313
           + + AKF+FP  +   +S+ +    Y++EEFE
Sbjct: 394 SFQEAKFQFPRIELHQISELFNLGTYQKEEFE 425


>Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical
           protein R06C7.10 protein.
          Length = 1938

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 148 RYCALGFPERTTHPS-LEPISSSARQHFIDADDME 47
           R C  GFP RT HP  ++  +  A +    +DDM+
Sbjct: 708 RICRKGFPNRTQHPDFVQRYAILAAKEAKSSDDMK 742


>Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical
           protein R06C7.10 protein.
          Length = 1938

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 148 RYCALGFPERTTHPS-LEPISSSARQHFIDADDME 47
           R C  GFP RT HP  ++  +  A +    +DDM+
Sbjct: 708 RICRKGFPNRTQHPDFVQRYAILAAKEAKSSDDMK 742


>X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.
          Length = 1938

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 148 RYCALGFPERTTHPS-LEPISSSARQHFIDADDME 47
           R C  GFP RT HP  ++  +  A +    +DDM+
Sbjct: 708 RICRKGFPNRTQHPDFVQRYAILAAKEAKSSDDMK 742


>AC006777-5|AAK72311.1|  247|Caenorhabditis elegans Hypothetical
           protein Y46H3D.8 protein.
          Length = 247

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +1

Query: 118 CVRETPRHSSACAYWTAHYVCT 183
           C   T   SSACA W A+  CT
Sbjct: 206 CTSYTADSSSACASWAANGFCT 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,940,123
Number of Sequences: 27780
Number of extensions: 228094
Number of successful extensions: 593
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)