Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_A07
(349 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ... 36 0.002
SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces pombe... 30 0.089
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 29 0.27
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 27 1.1
SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|c... 27 1.1
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 27 1.1
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce... 26 1.9
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar... 25 2.5
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 25 2.5
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom... 25 3.4
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 25 4.4
SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual 25 4.4
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 24 7.8
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 24 7.8
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 24 7.8
>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 485
Score = 35.9 bits (79), Expect = 0.002
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = -3
Query: 188 IFFLFEISAIVDQFFQKNFV*HSSFYVAMSCYFLRVIQIIWTLE--KHMEIRFLTCTII 18
+FFLF+ ++I+ F +++ + SF++A+S I+ TLE KH IR L I+
Sbjct: 8 VFFLFDFTSIMAGFKVPSWITYKSFWIAVSSSVTTACVILGTLEFRKHRSIRRLQSMIV 66
>SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 30.3 bits (65), Expect = 0.089
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +3
Query: 135 VFLKELIDNRRNFEKKKYILRSTRSEERYQSNDSISVNDENLLSALRKD 281
V+LKE + NFE + +I SEE Y S + +S + +L AL D
Sbjct: 99 VYLKERFKDT-NFEARGFIAHDLYSEEMYSSRNRLSNMELEVLRALNFD 146
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 28.7 bits (61), Expect = 0.27
Identities = 18/60 (30%), Positives = 24/60 (40%)
Frame = +3
Query: 102 HRNIERAVLDKVFLKELIDNRRNFEKKKYILRSTRSEERYQSNDSISVNDENLLSALRKD 281
H N E L K N E L +T ++ ++ +DSI ND NLL D
Sbjct: 677 HSNFENIALSKETFN--FGGEANCENTDTTLFTTWGDQGFRPSDSICYNDFNLLETANSD 734
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 26.6 bits (56), Expect = 1.1
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +3
Query: 156 DNRRNFEKKKYILRSTRSEERYQSNDS-ISVNDENLLSALRKDYDFTRSSMRSINE 320
+ +++ +KKK + +S+ + +S+DS +S +DE LS R R + R I+E
Sbjct: 935 EEKQSGKKKKKDRKKRKSKSKQESSDSGVSEDDEIPLSDARNKTKKRRVNRRVISE 990
>SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 169
Score = 26.6 bits (56), Expect = 1.1
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +3
Query: 168 NFEKKKYILRSTRS-EERYQSNDSISVNDENLLSALRKDYDFTRSSMRSINEIDSNL 335
N K IL S R+ EE+ ++ D + ++ LS L +Y+ + + S+N S++
Sbjct: 41 NARVKDVILESLRTTEEKLRALDKLQLDASKNLSNLLVEYNSINAELESVNSKISSI 97
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 26.6 bits (56), Expect = 1.1
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 225 SNDSISVNDENLLSALRKD-YDFTRSSMRSINEID 326
SND +SV + NLLS K+ R+S R I+ I+
Sbjct: 34 SNDKLSVEERNLLSVAYKNIIGARRASWRIISSIE 68
>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 403
Score = 25.8 bits (54), Expect = 1.9
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +3
Query: 135 VFLKELIDNRRNFEKKKYILRSTRSEERYQSNDSISVNDENLLSALRKDYDFT 293
V L +L+ + + + ++ + S+E Q ISV +NL+ L KDYD +
Sbjct: 277 VELNKLLQHLQLLQNQRITSHNVLSDEERQ----ISVQVQNLILKLAKDYDMS 325
>SPAC27F1.04c |nuf2||spindle pole body protein
Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 25.4 bits (53), Expect = 2.5
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 144 KELIDNRRNFEKKKYILRST-RSEERYQSNDSISVNDENLLSALRKDYDFTR 296
K L+ R E + I ++ R+EE +QS + D+ L S +R +YD R
Sbjct: 161 KVLLSQDRKLESEAIIKQNEERNEEMFQS----LIEDKRLCSQVRTEYDRIR 208
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 25.4 bits (53), Expect = 2.5
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = -2
Query: 240 IYCRCFDIVLLIVYFVKYIF----SFRNFGDCRSILSEKLC 130
I+ CF L +V F+ YIF SF N D +I+ KLC
Sbjct: 200 IWLICFGAPLFLVIFICYIFFTVLSFFNVPD--AIVYSKLC 238
>SPBC1778.02 |rap1||telomere binding protein
Rap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 693
Score = 25.0 bits (52), Expect = 3.4
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -1
Query: 187 YFFFSKFRRLSIN 149
YF+FSK RR+SI+
Sbjct: 239 YFYFSKMRRISID 251
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 24.6 bits (51), Expect = 4.4
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +3
Query: 156 DNR-RNFEKKKYILRSTRSEERYQSNDSISVNDENLLSALRKDYDFTRSSMRSINE 320
D+R R+ ++ Y L+ T ++ND+ S+N++N L + TR S ++ +
Sbjct: 484 DHRLRDSHREIYQLQGTGYRPFLRANDNASINNKNHHKELEDNESGTRISPSTLGD 539
>SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual
Length = 224
Score = 24.6 bits (51), Expect = 4.4
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = -2
Query: 225 FDIVLLIVYFVKYIFSFRNFGDCRSILSEKLCLTQLVLCCDVMLFSSG 82
FD ++ I +F +Y NF R+ + L ++ L D SG
Sbjct: 71 FDFIMNIYFFYQYSTYLENFVFARNAKKYIIYLVKVALLIDAFSLISG 118
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 23.8 bits (49), Expect = 7.8
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 148 N*STIAEISKRKNIFYEVHDQKNDIKATTVYL 243
N S+I ++ + FY VHD K T +L
Sbjct: 281 NESSIISSNREEESFYSVHDSVTQKKTRTSWL 312
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 23.8 bits (49), Expect = 7.8
Identities = 17/69 (24%), Positives = 31/69 (44%)
Frame = +3
Query: 114 ERAVLDKVFLKELIDNRRNFEKKKYILRSTRSEERYQSNDSISVNDENLLSALRKDYDFT 293
E+ K FLK + N K++ + ++ E ND + + + LS L +DY
Sbjct: 534 EKRKSKKEFLKAQKNEASNNLKQEIVSKAGAQETE---NDDLIDEESDALSELEEDYRQL 590
Query: 294 RSSMRSINE 320
+ S + N+
Sbjct: 591 KKSKKRKNQ 599
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 23.8 bits (49), Expect = 7.8
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Frame = +3
Query: 147 ELIDNRRNFEKKKY------ILRSTRSEERYQSNDSISVNDENLL 263
EL D+ F KKKY TRS R S+ S SVND + L
Sbjct: 453 ELNDSLDQFFKKKYEEEIKETKSPTRSSPRDLSSFSTSVNDGSFL 497
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,453,556
Number of Sequences: 5004
Number of extensions: 27824
Number of successful extensions: 106
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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