Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_A07
(349 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0092 + 16546204-16546693,16546958-16547028,16547145-165472... 31 0.25
03_02_0529 + 9218734-9218793,9218898-9220050,9220133-9220192,922... 30 0.43
05_05_0299 - 23930657-23932627 29 0.76
03_05_0220 + 22063411-22063468,22063535-22063545,22064478-220646... 27 4.0
11_03_0031 - 9094643-9095824,9095945-9096034,9096141-9096216,909... 26 7.1
02_01_0593 + 4408229-4408294,4408764-4409096,4409756-4409794,440... 26 7.1
02_05_0908 + 32668706-32669140,32669772-32669957,32670316-326704... 26 9.3
01_06_1261 - 35826513-35828941,35829201-35829294 26 9.3
>06_03_0092 + 16546204-16546693,16546958-16547028,16547145-16547221,
16547322-16547469,16550080-16550148,16550348-16550509,
16550625-16550785,16551240-16551324,16552068-16552144,
16552234-16552441,16555844-16555921,16556463-16556591,
16556665-16556808,16556893-16557038,16557137-16557293,
16557391-16557449,16557582-16557741,16557849-16557998,
16558093-16558229,16558325-16558471,16558556-16558657,
16558742-16558799,16558895-16558996,16559729-16559766,
16559868-16559994,16560075-16560245,16560334-16560465,
16560577-16560686,16560866-16560926,16561031-16561208,
16561293-16561498,16561590-16561709,16561903-16562001,
16562152-16562370,16562701-16562840,16563175-16563286,
16563375-16563425,16563509-16563589,16563683-16563853,
16563934-16564089,16564174-16564380,16565145-16565215,
16565315-16565414,16565783-16565839,16566156-16566212,
16566308-16566388,16566467-16566606,16566641-16566764
Length = 2041
Score = 31.1 bits (67), Expect = 0.25
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +3
Query: 177 KKKYILRSTRSEERYQSNDSISVNDENLLSALRKDYDFTRSSMRSINE 320
+ K IL+ S DS + + N +S+ +K++DF +S+NE
Sbjct: 1604 RSKSILQRNAESVHVSSGDSKAAPESNNISSPKKEFDFDDKPQKSLNE 1651
>03_02_0529 +
9218734-9218793,9218898-9220050,9220133-9220192,
9220284-9220363,9220486-9220730,9220815-9221138,
9221211-9221274,9221968-9222144
Length = 720
Score = 30.3 bits (65), Expect = 0.43
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Frame = +2
Query: 86 EENSMTSQHRTSCVRQSFSER-----IDRQSPKFRKEKIYFTKYTIRRTISKQRQ 235
EE+ + H +C+ S+ +DR+ P FR +K+Y+T+ +R+ K+R+
Sbjct: 320 EEHCIDGTHIQTCLLYSYLSSLILLDVDRK-PSFRNKKMYYTRQRTQRSTFKRRK 373
>05_05_0299 - 23930657-23932627
Length = 656
Score = 29.5 bits (63), Expect = 0.76
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = +3
Query: 105 RNIERAVLDKVFLKELIDNRRNFEKKKYILR---STRSEERYQSNDSISVNDENLLSALR 275
+ E+ ++D E +D F KK ++ R T SE++Y +D V+DE +
Sbjct: 235 KETEQILIDIFGKDEELDENSKFLKKFFLERPYLETGSEKKYSPDDIQEVSDEEEHLIEQ 294
Query: 276 KDYDFTRSSMR 308
+DY+ TR + R
Sbjct: 295 EDYE-TRYNFR 304
>03_05_0220 +
22063411-22063468,22063535-22063545,22064478-22064609,
22064696-22065799,22065874-22066566,22066968-22067019,
22067861-22067916,22067917-22068063
Length = 750
Score = 27.1 bits (57), Expect = 4.0
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = +3
Query: 81 YPKKIA*HRNIERAVLDKVFLKELIDNRRN 170
YP+K + + +I + +DK+ ++E ID+R N
Sbjct: 105 YPEKSSINSDITLSYIDKILMQEDIDDRGN 134
>11_03_0031 -
9094643-9095824,9095945-9096034,9096141-9096216,
9096759-9096976,9097283-9097512,9097617-9097683,
9097863-9098048,9098164-9098295,9098380-9098492,
9098771-9098777
Length = 766
Score = 26.2 bits (55), Expect = 7.1
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 189 ILRSTRSEERYQSNDSISVNDENLLSALRKDYDF 290
IL+ R ERY+ + + DE+L++A R Y +
Sbjct: 285 ILKGLR--ERYEIHHKVQYTDESLIAAARLSYQY 316
>02_01_0593 +
4408229-4408294,4408764-4409096,4409756-4409794,
4409870-4409937,4410024-4410068,4410478-4410655,
4410740-4410871,4410941-4411009,4411258-4411305,
4411498-4411545,4411654-4411763,4412044-4412125,
4412232-4412345
Length = 443
Score = 26.2 bits (55), Expect = 7.1
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 192 LRSTRSEERYQSNDSISVNDEN 257
L+ T+ E R Q ND++S+ D+N
Sbjct: 8 LKGTQFEIRVQPNDTVSLGDDN 29
>02_05_0908 +
32668706-32669140,32669772-32669957,32670316-32670414,
32671010-32671147,32672276-32672533,32675009-32675272,
32675426-32675571,32675762-32675839,32676746-32676875,
32677040-32677286,32677374-32677423,32677767-32677869,
32678332-32678354
Length = 718
Score = 25.8 bits (54), Expect = 9.3
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +3
Query: 195 RSTRSEERYQSNDSISVNDENLLSALRKDY--DFTRSSMRSINEI 323
R R ER+ + VN+E LLS L +D D R R +N++
Sbjct: 535 RRVRRAERFTWAATQGVNEEELLSNLPEDIQRDIRRHFFRFLNKV 579
>01_06_1261 - 35826513-35828941,35829201-35829294
Length = 840
Score = 25.8 bits (54), Expect = 9.3
Identities = 18/69 (26%), Positives = 32/69 (46%)
Frame = +3
Query: 129 DKVFLKELIDNRRNFEKKKYILRSTRSEERYQSNDSISVNDENLLSALRKDYDFTRSSMR 308
DK+ LK+ RN++ + L R +++S +E S+ KD D RS R
Sbjct: 489 DKILLKDYASILRNYKDTQKQLLEIEKRNREYHLEAMSEMNELKSSSATKD-DEIRSLRR 547
Query: 309 SINEIDSNL 335
++ + + L
Sbjct: 548 MLSSLQTKL 556
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,104,102
Number of Sequences: 37544
Number of extensions: 134879
Number of successful extensions: 342
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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