Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_A07
(349 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF068721-7|AAC19264.1| 531|Caenorhabditis elegans Hypothetical ... 29 0.91
AF068721-6|AAL00880.1| 564|Caenorhabditis elegans Hypothetical ... 29 0.91
Z83113-4|CAB05546.2| 1020|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z54236-7|CAA90982.1| 1471|Caenorhabditis elegans Hypothetical pr... 29 1.2
AF180730-1|AAF06159.1| 1020|Caenorhabditis elegans RNA interfere... 29 1.2
AL033514-20|CAA22086.1| 169|Caenorhabditis elegans Hypothetical... 27 2.8
Z81132-14|CAB03432.3| 378|Caenorhabditis elegans Hypothetical p... 27 3.7
Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical pr... 27 4.9
Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical pr... 27 4.9
AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical ... 27 4.9
AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protei... 27 4.9
AC090999-10|AAK26141.2| 251|Caenorhabditis elegans Hypothetical... 27 4.9
Z81586-5|CAB04696.1| 484|Caenorhabditis elegans Hypothetical pr... 26 6.4
Z72508-8|CAA96640.2| 366|Caenorhabditis elegans Hypothetical pr... 26 6.4
Z81586-9|CAB04699.2| 676|Caenorhabditis elegans Hypothetical pr... 26 8.5
U97010-1|AAB52322.1| 334|Caenorhabditis elegans Hypothetical pr... 26 8.5
U40417-13|AAA81420.1| 1330|Caenorhabditis elegans Hypothetical p... 26 8.5
U23486-4|AAC46776.2| 261|Caenorhabditis elegans Hypothetical pr... 26 8.5
AF022983-7|AAB69943.1| 306|Caenorhabditis elegans Hypothetical ... 26 8.5
AC006670-3|ABC71823.1| 350|Caenorhabditis elegans Patched relat... 26 8.5
AC006670-2|ABC71822.1| 901|Caenorhabditis elegans Patched relat... 26 8.5
>AF068721-7|AAC19264.1| 531|Caenorhabditis elegans Hypothetical
protein ZK1055.6a protein.
Length = 531
Score = 29.1 bits (62), Expect = 0.91
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 243 VNDENLLSALRKDYDFTRSSMRSINE 320
V DENLL+ L+K DF + M +NE
Sbjct: 105 VIDENLLTGLQKLLDFQETEMNKLNE 130
>AF068721-6|AAL00880.1| 564|Caenorhabditis elegans Hypothetical
protein ZK1055.6b protein.
Length = 564
Score = 29.1 bits (62), Expect = 0.91
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 243 VNDENLLSALRKDYDFTRSSMRSINE 320
V DENLL+ L+K DF + M +NE
Sbjct: 138 VIDENLLTGLQKLLDFQETEMNKLNE 163
>Z83113-4|CAB05546.2| 1020|Caenorhabditis elegans Hypothetical
protein K08H10.7 protein.
Length = 1020
Score = 28.7 bits (61), Expect = 1.2
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +3
Query: 213 ERYQSNDSISVNDENLLSALRKDYDFTRSSMRSINEID 326
+RY++ + + D+ L A RK +D+ ++++ + E+D
Sbjct: 423 QRYKNRIDLVMQDKFLKRATRKPHDYKENTLKMLKELD 460
>Z54236-7|CAA90982.1| 1471|Caenorhabditis elegans Hypothetical
protein C27B7.7 protein.
Length = 1471
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = +3
Query: 135 VFLKELIDNRRNF----EKKKYILRSTRSEERYQSNDSISVNDE 254
+F+ IDN N EKK Y S + Y +NDS N+E
Sbjct: 44 LFISTSIDNSMNLKILVEKKPYFTGSVTGYKLYYTNDSSQTNEE 87
>AF180730-1|AAF06159.1| 1020|Caenorhabditis elegans RNA interference
promoting factorRDE-1 protein.
Length = 1020
Score = 28.7 bits (61), Expect = 1.2
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +3
Query: 213 ERYQSNDSISVNDENLLSALRKDYDFTRSSMRSINEID 326
+RY++ + + D+ L A RK +D+ ++++ + E+D
Sbjct: 423 QRYKNRIDLVMQDKFLKRATRKPHDYKENTLKMLKELD 460
>AL033514-20|CAA22086.1| 169|Caenorhabditis elegans Hypothetical
protein Y75B8A.20 protein.
Length = 169
Score = 27.5 bits (58), Expect = 2.8
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +3
Query: 177 KKKYILRSTRSEERYQSNDSISVNDENLLSALRKDYDFTRSSMRSINEIDSNLYPMG 347
KK+ I + EE + D +S ND++LL+ ++K+ SS I +++ +G
Sbjct: 77 KKREIDAGVQEEESVSTKD-VSCNDDSLLAIMKKEMTTGESSAVKIALVEAAEQELG 132
>Z81132-14|CAB03432.3| 378|Caenorhabditis elegans Hypothetical
protein T26E4.3 protein.
Length = 378
Score = 27.1 bits (57), Expect = 3.7
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -2
Query: 252 HHLQIYCRCFDIVLLIVYFVKYIFSFRNFGDCRSI--LSEKLCLTQLV 115
HHL +C F I+ I+ +K RNF + I + EKL L Q V
Sbjct: 7 HHLIWFCVVFGIICNILVVLKISRDARNFKCFQKIQKVVEKLLLLQFV 54
>Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical protein
W02B9.1b protein.
Length = 2920
Score = 26.6 bits (56), Expect = 4.9
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +3
Query: 132 KVFLKELIDNRRNFEKKKYILRSTRSEERYQSNDSISVNDENLLSALR 275
++ + ++ DN +FE++KYI R SE +I +D + S LR
Sbjct: 1322 QIVINDVNDNAPSFEEQKYIGRVKESEGEGHDVITIKAHDLDKHSNLR 1369
>Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical protein
W02B9.1b protein.
Length = 2920
Score = 26.6 bits (56), Expect = 4.9
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +3
Query: 132 KVFLKELIDNRRNFEKKKYILRSTRSEERYQSNDSISVNDENLLSALR 275
++ + ++ DN +FE++KYI R SE +I +D + S LR
Sbjct: 1322 QIVINDVNDNAPSFEEQKYIGRVKESEGEGHDVITIKAHDLDKHSNLR 1369
>AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical
protein W02B9.1b protein.
Length = 2920
Score = 26.6 bits (56), Expect = 4.9
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +3
Query: 132 KVFLKELIDNRRNFEKKKYILRSTRSEERYQSNDSISVNDENLLSALR 275
++ + ++ DN +FE++KYI R SE +I +D + S LR
Sbjct: 1322 QIVINDVNDNAPSFEEQKYIGRVKESEGEGHDVITIKAHDLDKHSNLR 1369
>AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protein
protein.
Length = 2920
Score = 26.6 bits (56), Expect = 4.9
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +3
Query: 132 KVFLKELIDNRRNFEKKKYILRSTRSEERYQSNDSISVNDENLLSALR 275
++ + ++ DN +FE++KYI R SE +I +D + S LR
Sbjct: 1322 QIVINDVNDNAPSFEEQKYIGRVKESEGEGHDVITIKAHDLDKHSNLR 1369
>AC090999-10|AAK26141.2| 251|Caenorhabditis elegans Hypothetical
protein Y82E9BR.13 protein.
Length = 251
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 137 FSERIDRQSPKFRKEKIYFTKYTIR 211
FS+ I+RQ +F +E YF + IR
Sbjct: 154 FSDSIERQIQQFEEETEYFESFMIR 178
>Z81586-5|CAB04696.1| 484|Caenorhabditis elegans Hypothetical
protein T05F1.7 protein.
Length = 484
Score = 26.2 bits (55), Expect = 6.4
Identities = 10/59 (16%), Positives = 32/59 (54%)
Frame = +3
Query: 150 LIDNRRNFEKKKYILRSTRSEERYQSNDSISVNDENLLSALRKDYDFTRSSMRSINEID 326
L++++ +K+Y+ + + E+ + + + + L +RK +F + ++S +E++
Sbjct: 371 LVESKDEKREKEYLEKKEKLAEKIKQIEKSTDEQKTELERIRKRSEFLKRQLKSYSELN 429
>Z72508-8|CAA96640.2| 366|Caenorhabditis elegans Hypothetical
protein F28H7.9 protein.
Length = 366
Score = 26.2 bits (55), Expect = 6.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 99 MLFSSGNTDNLDLRKAYGN*VSY 31
++F NTD LDLR +G ++Y
Sbjct: 300 LIFLLSNTDQLDLRTTFGEEMNY 322
>Z81586-9|CAB04699.2| 676|Caenorhabditis elegans Hypothetical
protein T05F1.11 protein.
Length = 676
Score = 25.8 bits (54), Expect = 8.5
Identities = 17/76 (22%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +3
Query: 111 IERAVLDKVFLKELIDNRRNFEKKKYILRSTRSEERYQSNDSI-SVNDENLLSALRK-DY 284
+++ +L+ + L++ I R ++KYI T RY +++ + + +E L S R +
Sbjct: 50 VKKKLLESIELQQFIVGRDIEFQEKYIASLTDGLSRYNNHNELEEIRNEKLSSEERHFEL 109
Query: 285 DFTRSSMRSINEIDSN 332
+ R+ + + +SN
Sbjct: 110 ESARNKLNGLRIQNSN 125
>U97010-1|AAB52322.1| 334|Caenorhabditis elegans Hypothetical
protein W08A12.4 protein.
Length = 334
Score = 25.8 bits (54), Expect = 8.5
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +2
Query: 89 ENSMTSQHRTSCVRQSFSERIDRQSPKFRKEKIYFTKYTIRRTISKQR 232
ENS + S S E+ +Q +FR KI F + RT+ Q+
Sbjct: 101 ENSQRNTEVYSPYLDSLKEKSLKQDEQFRNNKIRFKNEEMDRTLKYQQ 148
>U40417-13|AAA81420.1| 1330|Caenorhabditis elegans Hypothetical
protein T08A9.1 protein.
Length = 1330
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/59 (22%), Positives = 33/59 (55%)
Frame = +3
Query: 102 HRNIERAVLDKVFLKELIDNRRNFEKKKYILRSTRSEERYQSNDSISVNDENLLSALRK 278
HR + + L + ++ ++ + KK+ L ++SEE + +D++ +N +++ LR+
Sbjct: 138 HRFLHKGWLALINNLDISVSKMDKRGKKFKLVHSKSEELIEKSDTLLLNYSDVVEQLRR 196
>U23486-4|AAC46776.2| 261|Caenorhabditis elegans Hypothetical
protein F07F6.2 protein.
Length = 261
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 255 FHHLQIYCRCFDIVLLIVYFVKYIFSFRN 169
F+ L+IY + + IVL I+ + + F RN
Sbjct: 78 FYALKIYKKVYLIVLYIILIIHFGFEIRN 106
>AF022983-7|AAB69943.1| 306|Caenorhabditis elegans Hypothetical
protein R13D11.1 protein.
Length = 306
Score = 25.8 bits (54), Expect = 8.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -2
Query: 111 CCDVMLFSSGNTDNLDLRK 55
CC+ ++F S N DN+ L+K
Sbjct: 263 CCNGIIFISSNWDNVKLKK 281
>AC006670-3|ABC71823.1| 350|Caenorhabditis elegans Patched related
family protein12, isoform b protein.
Length = 350
Score = 25.8 bits (54), Expect = 8.5
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Frame = +3
Query: 9 SQTNNGACKKPNFHMLF*GPNYLYYPKKIA*HRNIERAVLDKVFLKELI--DNRRNFEKK 182
S G N M P YL++ + H R VLD+ F+ I N +++ +
Sbjct: 82 SIVKRGGIDVNNLPMFLEWPEYLFWKGFVQFHSAENRTVLDRFFITFAIHGTNLQSWPAR 141
Query: 183 KYILRSTRS-EERYQSNDSISV 245
LR R+ ++Y + +SV
Sbjct: 142 GDALREWRNVVDKYSAEFGLSV 163
>AC006670-2|ABC71822.1| 901|Caenorhabditis elegans Patched related
family protein12, isoform a protein.
Length = 901
Score = 25.8 bits (54), Expect = 8.5
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Frame = +3
Query: 9 SQTNNGACKKPNFHMLF*GPNYLYYPKKIA*HRNIERAVLDKVFLKELI--DNRRNFEKK 182
S G N M P YL++ + H R VLD+ F+ I N +++ +
Sbjct: 633 SIVKRGGIDVNNLPMFLEWPEYLFWKGFVQFHSAENRTVLDRFFITFAIHGTNLQSWPAR 692
Query: 183 KYILRSTRS-EERYQSNDSISV 245
LR R+ ++Y + +SV
Sbjct: 693 GDALREWRNVVDKYSAEFGLSV 714
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,846,721
Number of Sequences: 27780
Number of extensions: 151368
Number of successful extensions: 544
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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