Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_A06
         (248 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    28   0.16 
SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr 2|...    25   1.9  
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    25   1.9  
SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    24   2.6  
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar...    24   2.6  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    24   3.4  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    24   3.4  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    24   3.4  
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    23   4.5  
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    23   5.9  
SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces p...    23   5.9  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    23   7.8  
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe...    23   7.8  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    23   7.8  

>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 28.3 bits (60), Expect = 0.16
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = -3

Query: 177 SGNNFP---SNVLWAKVNNILIAYLECNEIP 94
           + NNF    SN+   K+N +LIAYLE   IP
Sbjct: 146 NANNFDFSLSNITTEKMNGLLIAYLETWHIP 176


>SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = +3

Query: 6   RIIISIVAIELCIYLLHIFALTSSLRDDTKESHYILNTLSKCYLLWPKEHYLEN 167
           RI+       +C  +L     T   R DT  + YIL   +   L++P  + + N
Sbjct: 64  RIVFIASESYICYLMLMTLRPTYDKRLDTFRTEYILGGCAVLALIYPTSYTISN 117


>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -3

Query: 165 FPSNVLWAKVNNILIAYL 112
           FP N LWA   N   AYL
Sbjct: 36  FPGNTLWAAALNRFTAYL 53


>SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -3

Query: 147 WAKVNNILIAYLECNEI 97
           W+K N++L  Y++C ++
Sbjct: 209 WSKFNSVLSRYIQCTKL 225


>SPAC27F1.04c |nuf2||spindle pole body protein
           Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 2   HEDYYFYCSYRTLHLFVAYICFN*FT 79
           HE   F   Y+ L  F+  ICF+ FT
Sbjct: 76  HESLRFTVFYQILSQFMQNICFHDFT 101


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 144 AKVNNILIAYLECNEIPSYRLAVN*LKQIYA 52
           AK+ N +   L  N  PS+   VN +++IYA
Sbjct: 454 AKLTNEICDSLYWNPSPSFESQVNSVRRIYA 484


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +3

Query: 42  IYLLHIFALTSSLRDDTKESHYILNTLSKCYLLWPKEHYLENCYQKR 182
           I +L++    +   ++   + Y+ NT S      P +H   +CYQK+
Sbjct: 364 IGVLNVTHTITKTEENDSTTEYV-NTESSSKTPAPHKHTFNSCYQKK 409


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 75  SLRDDTKESHYILNTLSKCYLLWPKEHYLEN 167
           S+RD +   +Y+ N + K  +L   E Y E+
Sbjct: 489 SIRDKSMNDYYVKNMVRKAQVLEQLEKYQES 519


>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 121 YQNVIYFGPKNITWKIVTRNVWKFE 195
           Y  VI    KN++  IV+R +W  +
Sbjct: 721 YDTVIGVAIKNLSQSIVSRGLWSID 745


>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 189 FPYVSGNNFPSNVLWAKVN 133
           F  +SG NFP+N  W  +N
Sbjct: 323 FLAMSGQNFPANQKWDILN 341


>SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +1

Query: 127 NVIYFGPKNIT 159
           N++YF PKNIT
Sbjct: 105 NLVYFVPKNIT 115


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 248 CYI*LTQFRTHPFIRHVNSNFHTFLV 171
           CY  L Q ++ PFI   N ++  +L+
Sbjct: 863 CYSYLRQCKSSPFINFWNVSYGKYLI 888


>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 105 YILNTLSKCYLLWPKEHYLEN 167
           Y+LN L+ CYL + K+ + +N
Sbjct: 85  YVLNVLAICYLKY-KDAFFKN 104


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +3

Query: 57  IFALTSSLRDDTKESHYILNTLSKCYLLWPKEHYLENCYQKRMEIRIHMTY 209
           IF+  +S  +DT     I+  L+K +LL+   + L         I +H TY
Sbjct: 179 IFSKANS--NDTTSESIIVKILAKVFLLYEDAYKLFKNATGAPSIFVHWTY 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,063,387
Number of Sequences: 5004
Number of extensions: 19244
Number of successful extensions: 65
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 45369236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)