Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_A06
(248 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1085 + 9890369-9892114,9892213-9892731 28 1.2
07_01_1076 + 9649003-9650226,9653318-9653743,9653853-9654371 28 1.2
01_06_0638 - 30768546-30768779,30768908-30769017,30769301-307694... 27 2.1
08_01_0343 - 3025577-3025810,3026428-3026505,3026630-3026748,302... 26 3.7
08_02_0233 + 14593639-14594468,14594480-14594986,14595362-145958... 25 6.4
07_03_1101 + 23967298-23967366,23968918-23969021,23969616-239697... 25 6.4
05_01_0327 - 2565574-2565654,2566037-2566099,2566511-2566591,256... 25 6.4
03_05_1123 - 30554938-30555075,30555719-30556077,30556136-30556280 25 6.4
11_06_0068 - 19759141-19761180 25 8.5
01_05_0337 + 21115388-21115961,21116471-21116597,21116683-211168... 25 8.5
>07_01_1085 + 9890369-9892114,9892213-9892731
Length = 754
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 87 DTKESHYILNTLSKCYLLWPKEHYLENCYQKRMEIRIHMT 206
D K+ +LNT SK L P + +EN Y +R+ T
Sbjct: 703 DPKDGRILLNTGSKLGLYDPTKRVIENLYDLDEVLRVKQT 742
>07_01_1076 + 9649003-9650226,9653318-9653743,9653853-9654371
Length = 722
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 87 DTKESHYILNTLSKCYLLWPKEHYLENCYQKRMEIRIHMT 206
D K+ +LNT SK L P + +EN Y +R+ T
Sbjct: 671 DPKDGRILLNTGSKLGLYDPTKRVIENLYDLDEVLRVKQT 710
>01_06_0638 -
30768546-30768779,30768908-30769017,30769301-30769490,
30769842-30769914,30770007-30770063,30770147-30770211,
30770278-30770488,30770568-30770650,30771123-30771158,
30771611-30771713,30771813-30771899,30772210-30772403
Length = 480
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 36 LCIYLLHIFALTSSLRDDTKESHYILNTLSKC 131
LC +++H AL + DD ++ I++ LS+C
Sbjct: 98 LCYWIIHALALLDEIPDDVEDD--IVDFLSRC 127
>08_01_0343 -
3025577-3025810,3026428-3026505,3026630-3026748,
3027566-3027645,3028034-3028107,3028536-3028620,
3028704-3028789,3028968-3029038,3029126-3029207,
3029490-3029531,3029552-3029584,3029699-3029794,
3030163-3030414,3030970-3031149,3032079-3032119,
3032341-3032470,3032504-3032606,3032686-3032773,
3033151-3033304,3033688-3033739,3033815-3033894,
3034478-3034789,3034886-3034955,3035033-3035100,
3035405-3035678,3036408-3036580,3037036-3037128,
3037228-3037443
Length = 1121
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -3
Query: 171 NNFPS--NVLWAKVNNILIAYLECNEIPSYR 85
+N+PS N++WAKV I++ L+ + R
Sbjct: 625 HNYPSCANIIWAKVQYIVLDLLQMQSLEDQR 655
>08_02_0233 +
14593639-14594468,14594480-14594986,14595362-14595856,
14596592-14596662,14597116-14597199,14597328-14597446,
14598029-14598109,14598397-14598411
Length = 733
Score = 25.4 bits (53), Expect = 6.4
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -3
Query: 174 GNNFPSNVLWAKVNNILIAYLECN--EIPSYRLAVN*LKQIYATNKC 40
GNNFP + A V++ L A C I S RLA ++ A KC
Sbjct: 64 GNNFPEHRRSAFVDHALAALAACESPRILSLRLASEEIEGGAAEEKC 110
>07_03_1101 +
23967298-23967366,23968918-23969021,23969616-23969716,
23969792-23969858,23969910-23970045,23970470-23970583,
23970649-23970786,23970865-23970949,23971029-23971075,
23971216-23971351,23971396-23971436
Length = 345
Score = 25.4 bits (53), Expect = 6.4
Identities = 16/67 (23%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Frame = +3
Query: 30 IELCIYLLHIFALTSSLRDDTKESHYILNTLSKCYLLWPKEHYLENCYQKR-MEIRIHMT 206
+EL + + + S ++ +S +L+ ++ C+L + K H L++ YQ+R + + I +
Sbjct: 70 VELVCFTENPTYVLHSSKNGWDDSLRLLSLVNNCFLRYFKGH-LDSQYQQRILSVLIRVV 128
Query: 207 YKRMCSK 227
+CS+
Sbjct: 129 SISLCSE 135
>05_01_0327 -
2565574-2565654,2566037-2566099,2566511-2566591,
2566710-2566787,2566892-2566984,2567108-2567225,
2567568-2567695,2567808-2568083,2568763-2568917,
2568997-2569140,2569427-2569844
Length = 544
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 90 TKESHYILNTLSKCYLLWPKEHYL 161
T+ S N L KC LW K HY+
Sbjct: 353 TRGSFIPSNILLKCLQLWKKFHYI 376
>03_05_1123 - 30554938-30555075,30555719-30556077,30556136-30556280
Length = 213
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 119 AIKMLFTLAQRTLLGKLLPETY 184
AIK +F +RT GK+LP+ Y
Sbjct: 94 AIKSIFDPNERTKSGKVLPKAY 115
>11_06_0068 - 19759141-19761180
Length = 679
Score = 25.0 bits (52), Expect = 8.5
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = +3
Query: 78 LRDDTKESHY-IL--NTLSKCYLLWPKEHYLENCYQKRMEIRIHMTYKRMCSKL 230
L+D E H IL NTL + + L+NC+ M I H+++K M L
Sbjct: 397 LKDGLAEYHRGILEDNTLVTVKTPYDGDESLKNCFLMEMMILSHISHKNMVKLL 450
>01_05_0337 +
21115388-21115961,21116471-21116597,21116683-21116884,
21117460-21117546,21117622-21117681,21117800-21117886,
21118451-21118522,21118675-21118730,21118812-21118897,
21119427-21119517,21119593-21119750,21119827-21119918,
21120110-21120190,21120282-21120479
Length = 656
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = -3
Query: 201 CEFEFPYVSGNNFPSNVLWAKVNNILIAYLECNEIPSYRLAVN*LK 64
C+ FP S N A +N+ +EC+ +P AV+ L+
Sbjct: 503 CDVAFPCASQNEIDQAEALAIINSGCRVLIECSNMPCTAQAVDILR 548
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,978,884
Number of Sequences: 37544
Number of extensions: 98716
Number of successful extensions: 228
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 14,793,348
effective HSP length: 61
effective length of database: 12,503,164
effective search space used: 262566444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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