Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_A06
(248 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006663-5|AAY43999.1| 490|Caenorhabditis elegans Hypothetical ... 28 0.76
AC024805-10|AAK39342.3| 1058|Caenorhabditis elegans Hypothetical... 27 1.3
AF003140-4|AAD47119.1| 2712|Caenorhabditis elegans Hypothetical ... 26 3.1
AF003140-3|AAM15563.1| 2710|Caenorhabditis elegans Hypothetical ... 26 3.1
Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical pr... 25 5.4
U41273-2|AAA82454.2| 306|Caenorhabditis elegans Hypothetical pr... 25 5.4
U21310-1|AAA62519.1| 997|Caenorhabditis elegans Hypothetical pr... 25 9.4
AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm (myotubu... 25 9.4
AF025472-3|AAB71075.2| 843|Caenorhabditis elegans Hypothetical ... 25 9.4
AF016686-12|AAB66234.1| 723|Caenorhabditis elegans Hypothetical... 25 9.4
AF016657-1|AAB93653.1| 361|Caenorhabditis elegans Hypothetical ... 25 9.4
>AC006663-5|AAY43999.1| 490|Caenorhabditis elegans Hypothetical
protein H24K24.2 protein.
Length = 490
Score = 28.3 bits (60), Expect = 0.76
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 122 IKMLFTLAQRTLLGKLLPETYGNS 193
+ M FTL + L LLPETY N+
Sbjct: 343 VNMFFTLKKLLSLADLLPETYSNA 366
>AC024805-10|AAK39342.3| 1058|Caenorhabditis elegans Hypothetical
protein Y51H7C.11 protein.
Length = 1058
Score = 27.5 bits (58), Expect = 1.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 57 IFALTSSLRDDTKESHYILNTLSKCYLLWP 146
+FA TSS +++ HY+L + K L P
Sbjct: 623 VFAATSSTNKSSEDQHYVLPEIGKIPLFTP 652
>AF003140-4|AAD47119.1| 2712|Caenorhabditis elegans Hypothetical
protein C44E4.1a protein.
Length = 2712
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +2
Query: 92 EGISLHSKYAIKMLFTLAQRTLLGKLLPETYGNSNS 199
+G+SLH +LF + LPE GNS +
Sbjct: 128 DGVSLHYSSTFNLLFVSLENGAFVAQLPEPTGNSTA 163
>AF003140-3|AAM15563.1| 2710|Caenorhabditis elegans Hypothetical
protein C44E4.1c protein.
Length = 2710
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +2
Query: 92 EGISLHSKYAIKMLFTLAQRTLLGKLLPETYGNSNS 199
+G+SLH +LF + LPE GNS +
Sbjct: 128 DGVSLHYSSTFNLLFVSLENGAFVAQLPEPTGNSTA 163
>Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical protein
W05B2.4 protein.
Length = 2265
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/51 (21%), Positives = 25/51 (49%)
Frame = +3
Query: 57 IFALTSSLRDDTKESHYILNTLSKCYLLWPKEHYLENCYQKRMEIRIHMTY 209
+ A + + + E H+IL + S C + ++ Y+EN + R+ ++
Sbjct: 1809 LIAANFTAKSFSSEYHHILESFSSCIVEIVRKPYVENLSSMALATRLAKSF 1859
>U41273-2|AAA82454.2| 306|Caenorhabditis elegans Hypothetical
protein C26B9.6 protein.
Length = 306
Score = 25.4 bits (53), Expect = 5.4
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = +3
Query: 90 TKESHY-ILNTLSKCYLLW-PK-EHYLENCYQKRME 188
T+E +Y I + S Y + PK E YLE CY ++ME
Sbjct: 209 TREKYYWIYESSSFGYYRYDPKDEKYLEECYCRKME 244
>U21310-1|AAA62519.1| 997|Caenorhabditis elegans Hypothetical
protein F40H6.2 protein.
Length = 997
Score = 24.6 bits (51), Expect = 9.4
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +3
Query: 120 LSKCYLLWPKEHYLEN 167
LS Y+++P E+YL+N
Sbjct: 818 LSPVYIIYPTEYYLQN 833
>AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm
(myotubularin) family protein 5 protein.
Length = 1744
Score = 24.6 bits (51), Expect = 9.4
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +3
Query: 90 TKESHYILNTLSKCYLLWPKEHYLENCYQKRMEI--RIH 200
+ ES I+ +S C L+ KE Y+E C ++ EI +IH
Sbjct: 435 SSESKKIIEHIS-CELI-QKERYMEKCSARKQEIFTKIH 471
>AF025472-3|AAB71075.2| 843|Caenorhabditis elegans Hypothetical
protein ZK250.6 protein.
Length = 843
Score = 24.6 bits (51), Expect = 9.4
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -3
Query: 240 MTDTI*NTSVYTSCEFEFPYVSGN-NFPSNVLWAKVNNILIAYLECNE 100
++ TI N S + + E F V N P + K+N L+ YL+C++
Sbjct: 272 ISQTIRNISKFLNGEQYFTDVEERFNIPWRMRICKLNGDLVFYLQCDK 319
>AF016686-12|AAB66234.1| 723|Caenorhabditis elegans Hypothetical
protein R07C3.4 protein.
Length = 723
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = -1
Query: 227 FRTHPFIRH--VNSNFHTFLVTIFQVMFF 147
+ H + H + SNFH FL +V FF
Sbjct: 313 YERHCTLAHFKIGSNFHNFLNKFVEVFFF 341
>AF016657-1|AAB93653.1| 361|Caenorhabditis elegans Hypothetical
protein C16C4.7 protein.
Length = 361
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 23 CSYRTLHLFVAYICFN*FTARRYEGISLHSKY 118
C + L LFV ++CF R+ GISL +
Sbjct: 275 CRSQHLVLFVLFLCFYGEFRRQIRGISLFPSF 306
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,796,325
Number of Sequences: 27780
Number of extensions: 106367
Number of successful extensions: 283
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 12,740,198
effective HSP length: 62
effective length of database: 11,017,838
effective search space used: 220356760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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