Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_A04
         (366 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    27   1.2  
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    26   2.1  
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    24   6.4  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    24   6.4  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    24   8.5  
SPBC1677.02 |dpm3||dolichol-phosphate mannosyltransferase subuni...    24   8.5  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    24   8.5  

>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +1

Query: 58  VDAVTIEKLEAGFSKLQGSESKSLLKKYLTKEVFEALKNKKTSFGSTLLDCIQ 216
           V  V  E + +   KL  SES  L KK+   ++   LK++  +   +LLD I+
Sbjct: 555 VSKVANESISSNHEKLMESESDRLSKKWENPQLLAQLKSRFIT--GSLLDSIE 605


>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +2

Query: 257 ISESRNSARGQQEVSNSCSFSPKPVQ-ITIIE 349
           +SE+R +   + +V NSCS  PKP   ITII+
Sbjct: 125 LSENRQNVLERVKVFNSCS-PPKPTNPITIID 155


>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -2

Query: 293 PAVHGRCYDFR*SSAGMFRKASATPDWMQSSRVEPNEVF 177
           P +  R  D   S     R+A   PD  + SRV+ NE+F
Sbjct: 372 PDILSRLKDAEKSKELQDREAYIDPDKAEESRVKGNELF 410


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 260 SESRNSARGQQEVSNSCSFSPKPVQITIIEELP*R 364
           S S+NS      +S +    P P+Q T+I   P R
Sbjct: 508 SNSQNSPSKSSNLSINIDIPPSPLQNTVISPQPTR 542


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1085

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = -2

Query: 239  RKASATPDWMQSSRVEPNEVFLFLRASKTSLVRYFFNSDFDSEPWSLLKPASN 81
            R+  ATP W + S +      L L + K  +   + +S+  +EP    KP+++
Sbjct: 1015 RELPATPSWTRDSSLIKETTNLNLDSDKKFVRETYTSSNQTNEPDVYDKPSNS 1067


>SPBC1677.02 |dpm3||dolichol-phosphate mannosyltransferase subunit
           3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 90

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -2

Query: 188 NEVFLFLRASKTSLVRYFFNSDFDSEPWSLLKPASNFSMVTA 63
           ++V L+   S T L R  +  D + EPWS L+P + +  + A
Sbjct: 5   HKVILYY-VSLTILYRVTYLFDLE-EPWSTLRPYTPYLFILA 44


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = +1

Query: 76  EKLEA--GFSKLQGSESKSLLKKYLTKEVFEALKN 174
           EKLE   G  KL+ ++  +    YLTK+VFEAL++
Sbjct: 877 EKLENIDGMEKLKVADYAN----YLTKKVFEALRS 907


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,429,566
Number of Sequences: 5004
Number of extensions: 25222
Number of successful extensions: 79
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)