Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_A04
(366 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1296 - 29104857-29105870 31 0.28
10_08_0001 + 13984436-13984514,13984804-13984926,13985181-139854... 28 2.0
08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378 28 2.0
03_05_0447 - 24421442-24422767 28 2.6
03_01_0426 + 3292358-3292780,3292858-3293094,3293166-3293759 27 3.4
08_02_0767 + 21004373-21004545,21004656-21004711,21004800-210048... 27 4.5
02_03_0215 + 16505994-16506542,16506803-16507894 27 4.5
03_05_1072 + 30148360-30148833,30148959-30149036,30149156-301492... 27 6.0
01_03_0146 + 13120727-13121037,13121063-13121912,13122854-131235... 27 6.0
05_03_0608 + 16153992-16154960,16158959-16159168,16159252-161595... 26 7.9
02_02_0115 + 6946945-6947087,6947511-6947748 26 7.9
>06_03_1296 - 29104857-29105870
Length = 337
Score = 31.1 bits (67), Expect = 0.28
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Frame = -2
Query: 284 HGRCYDFR*SSAGMFRKASATPDWMQSSR---VEPNE-VFLFLRASKTSLVRYFFNSDFD 117
HG+ F + ++R S+ PDW + V NE V L KT FF D
Sbjct: 175 HGQILSFSITDM-IWRTVSSCPDWSKQDSHFLVASNEQVVAILHPCKTGSAFKFFKLDLQ 233
Query: 116 SEPWSLL 96
+ WSLL
Sbjct: 234 AMEWSLL 240
>10_08_0001 +
13984436-13984514,13984804-13984926,13985181-13985468,
13985560-13985690,13985764-13985979,13986059-13986442
Length = 406
Score = 28.3 bits (60), Expect = 2.0
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = +1
Query: 25 GCSSARKAAAMVDAVTIEKLEAGFSKLQGSESKSLLKKYLTKEVFEALKNKKTSFGSTLL 204
G + + D I++ E +S LQGS + + + F AL SFG +L
Sbjct: 151 GFAGTAIGVTIYDGHRIDRKEVDYS-LQGSAASKIFR------AFNALGTIAFSFGDAML 203
Query: 205 DCIQSGVAEALR 240
IQS V E +R
Sbjct: 204 PEIQSSVREPVR 215
>08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378
Length = 477
Score = 28.3 bits (60), Expect = 2.0
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +1
Query: 4 RGAVDSDGCSSARKAAAMVDAVTIEKLEAGFSKLQGSESKSLLKKYLTKEVFEALK 171
R A++ G + +AAA V A L KLQ S L +K L +E+ + L+
Sbjct: 347 RAALNDGGAEAPARAAAGVPAEADADLSPTNKKLQSLYSSLLKEKELIQELLQGLR 402
>03_05_0447 - 24421442-24422767
Length = 441
Score = 27.9 bits (59), Expect = 2.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 22 DGCSSARKAAAMVDAVTIEKLEAGFSKLQG 111
DGC S+ A++ A + +LEAG K G
Sbjct: 63 DGCGSSGAGDALLAAAALARLEAGLRKRTG 92
>03_01_0426 + 3292358-3292780,3292858-3293094,3293166-3293759
Length = 417
Score = 27.5 bits (58), Expect = 3.4
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +1
Query: 25 GCSSARKAAAMVDAVTIEKLEAGFSKLQGSESKSLLKKY 141
G +A +AAA D V + + EAGF L SES+ K++
Sbjct: 47 GEKAAAEAAAAADGVVVGEAEAGFD-LSASESEFDQKRH 84
>08_02_0767 +
21004373-21004545,21004656-21004711,21004800-21004882,
21004942-21005112,21005806-21005997
Length = 224
Score = 27.1 bits (57), Expect = 4.5
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = +3
Query: 198 PAGLHPIRCSRSFAKHPCA*SAKVVTA 278
P L PI CS S KHP A VVT+
Sbjct: 65 PPCLRPIHCSLSCDKHPGETIANVVTS 91
>02_03_0215 + 16505994-16506542,16506803-16507894
Length = 546
Score = 27.1 bits (57), Expect = 4.5
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = -1
Query: 324 FGLNEHELLTSCCPRALLRLSLIKRRDVSQSFCYT*LDAIQQ 199
FG+ + TS C + +K+RD+ +C L +I Q
Sbjct: 253 FGMEVLDRTTSYCTITMQNTDYVKKRDIFHKYCKVLLPSILQ 294
>03_05_1072 +
30148360-30148833,30148959-30149036,30149156-30149255,
30149371-30149501,30149604-30149855
Length = 344
Score = 26.6 bits (56), Expect = 6.0
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 130 LKKYLTKEVFEALKNKKTSFGSTLLDCIQSGVAEALRNIP 249
LKK +++ KT G +L +Q+GV E +++P
Sbjct: 260 LKKLKEGARIQSITQAKTRIGHAILLLLQAGVLEKFKSVP 299
>01_03_0146 +
13120727-13121037,13121063-13121912,13122854-13123561,
13123596-13123943
Length = 738
Score = 26.6 bits (56), Expect = 6.0
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -3
Query: 361 LW*FLDDGDLNRLRAKRA*VTDLLLSTGAVTTFADQAQG 245
+W + GD+N L AKR + DL LS + Q G
Sbjct: 262 VWRMAEHGDVNGLLAKRPELRDLCLSFSLFKSLRRQLSG 300
>05_03_0608 +
16153992-16154960,16158959-16159168,16159252-16159512,
16160153-16160197,16160324-16160410,16160679-16160774
Length = 555
Score = 26.2 bits (55), Expect = 7.9
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 73 IEKLEAGFSKLQGSESKSLLKKYLTKEVFEALKNKK 180
IEKLEA SK+ G + L K +E A ++ K
Sbjct: 434 IEKLEAAASKIFGGDKSRLRKVEELRETIRATEDAK 469
>02_02_0115 + 6946945-6947087,6947511-6947748
Length = 126
Score = 26.2 bits (55), Expect = 7.9
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +2
Query: 53 QW-WTP*PSRNWRLVSASSKARNQS 124
+W W P P+R W +V++ S R S
Sbjct: 37 RWQWRPPPARRWDIVASVSSTRQSS 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,966,299
Number of Sequences: 37544
Number of extensions: 186249
Number of successful extensions: 588
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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