Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_A03
         (377 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    26   1.7  
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    25   3.0  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    25   3.0  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    25   3.0  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    25   3.9  
SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos...    25   3.9  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    24   9.1  
SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch...    24   9.1  

>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
            orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 249  LTRTHTGTADQPTTIKLPNTTTSAFEILFLAGVAIT 142
            +T T TGTA   TT+ +   TT+  E+L   G   T
Sbjct: 1120 VTVTPTGTATGTTTVVINTPTTTGSEVLPTTGATGT 1155


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 241 NPHWDSRPAHHHQTAQ 194
           NPH +SR  H HQT++
Sbjct: 79  NPHPNSRQKHQHQTSK 94


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 233 LGQQTSPPPSNCPTQPLLLLKSY 165
           LG+ T+PPP +  T PL    SY
Sbjct: 278 LGKTTAPPPPHGSTTPLPAAASY 300


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1213

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -3

Query: 168  LFLAGVAITLMFLCWSTFFRICRLVLRRLWTPNILV 61
            LFL G+AI L+ L W+ F     + LR L++ + LV
Sbjct: 996  LFLQGLAIDLLKLPWAVF----HIFLRYLFSHSFLV 1027


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 332 IHFNHNNIRELLILMWYVFIPCLCS 258
           +++ H N   +L +   +FIP LC+
Sbjct: 21  VNYQHRNFESILEIFSVLFIPFLCN 45


>SPAC664.07c |rad9||checkpoint clamp complex protein
           Rad9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 225 ADQPTTIKLPNTTTSAFEILFLAGV 151
           +D+   IK P+TT  A + LFL G+
Sbjct: 366 SDETNGIKEPSTTNDAGQSLFLDGI 390


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 356 DSKLTVYLIHFNHNNIREL 300
           ++ + VY IHF +NNI  L
Sbjct: 742 NTDINVYKIHFQYNNISGL 760


>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 49  KYKIYQNVGCPEPP 90
           KY ++ N+GCP PP
Sbjct: 77  KYNVF-NLGCPPPP 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,630,663
Number of Sequences: 5004
Number of extensions: 33294
Number of successful extensions: 74
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)