Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_A03
(377 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0242 + 3152138-3152168,3153293-3153813 28 2.1
04_04_1354 - 32841778-32841983,32842079-32843093,32843184-328435... 27 3.7
04_01_0308 + 4188726-4190351 27 3.7
12_01_1080 + 11241590-11241625,11241723-11242018,11242113-112422... 27 4.9
01_06_0246 + 27845898-27846001,27846235-27846237,27846472-278467... 27 4.9
11_04_0165 + 14305885-14306007,14306538-14306642,14306792-143068... 27 6.5
08_01_0796 - 7696339-7696457,7696749-7696795,7696813-7697084 27 6.5
04_04_1694 - 35419278-35419565,35419744-35419861,35420404-354204... 27 6.5
03_05_0883 + 28483429-28484385,28485090-28485398 27 6.5
03_05_0324 - 23121401-23121465,23121507-23122059 27 6.5
11_04_0255 - 15422536-15422640,15422734-15422790,15422917-154230... 26 8.6
01_03_0105 + 12604125-12604583 26 8.6
>04_01_0242 + 3152138-3152168,3153293-3153813
Length = 183
Score = 28.3 bits (60), Expect = 2.1
Identities = 20/71 (28%), Positives = 31/71 (43%)
Frame = -2
Query: 214 HHHQTAQHNHFCF*NLISSGCSDNAHVSLLEHIL*DLSVGSEEALDTQHFGIFYIFDLFQ 35
+HH A NHF N I +G H L + +++V ++ L G FD Q
Sbjct: 60 YHHLAAATNHFSMDNKIGAGAFGEVHKGFLTQLGREVAV--KKILRESRAGNKDFFDEVQ 117
Query: 34 STNCDRQSILV 2
+ + +Q LV
Sbjct: 118 TISRAKQKNLV 128
>04_04_1354 -
32841778-32841983,32842079-32843093,32843184-32843518,
32843590-32844019,32844155-32844214,32844531-32844651,
32845321-32846132
Length = 992
Score = 27.5 bits (58), Expect = 3.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 219 GLLSQCGFSSTSNTTETRNKNIPH 290
GLLSQCG + ++ + K +PH
Sbjct: 475 GLLSQCGHAKSTGERDPTEKVVPH 498
>04_01_0308 + 4188726-4190351
Length = 541
Score = 27.5 bits (58), Expect = 3.7
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = +2
Query: 89 LRTNRQILKNVLQQRNMSVIATPARNKISKAEVVVLGSLMVV 214
++TN+ +++ + V AT +N +S+AE+ L ++ V
Sbjct: 189 IQTNKDLVEGETNELQPEVFATEEKNSLSEAEIKCLKQILEV 230
>12_01_1080 +
11241590-11241625,11241723-11242018,11242113-11242269,
11242381-11242449,11242551-11243480,11243868-11243906,
11244414-11244478,11244663-11244768,11244850-11245050,
11247001-11247201,11247756-11247779,11249425-11249586,
11249676-11249915,11250267-11250479,11250618-11250968,
11251041-11251193,11251649-11251858,11252049-11252267,
11252365-11252482,11252879-11253828,11254023-11254220,
11254294-11254553,11255316-11255505,11255817-11256169,
11258278-11258386,11258466-11258615,11258748-11258844,
11259315-11259415
Length = 2065
Score = 27.1 bits (57), Expect = 4.9
Identities = 14/49 (28%), Positives = 29/49 (59%)
Frame = +2
Query: 107 ILKNVLQQRNMSVIATPARNKISKAEVVVLGSLMVVGWSAVPVWVLVNI 253
+++ VL++RN+ A+ + K AE+++L ++ G A+ V V+I
Sbjct: 514 LVEGVLEKRNLVYCASTSAGKSFVAEILMLRRILFSGKMAILVLPYVSI 562
>01_06_0246 +
27845898-27846001,27846235-27846237,27846472-27846700,
27846814-27846968,27847091-27847136,27847233-27847324,
27847425-27847521,27847649-27847705,27847799-27847927
Length = 303
Score = 27.1 bits (57), Expect = 4.9
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -1
Query: 233 LGQQTSPPPSNCPTQPLLLL 174
+G +TS S+CP+QPLL+L
Sbjct: 259 VGVRTSHTNSSCPSQPLLVL 278
>11_04_0165 +
14305885-14306007,14306538-14306642,14306792-14306869,
14307710-14307757,14308173-14308314,14308394-14308464,
14309210-14309306,14309517-14309728,14311995-14312267
Length = 382
Score = 26.6 bits (56), Expect = 6.5
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -1
Query: 143 RSCFSVGAHSLGSVGWF*GGSGHPTFWYILYF 48
+ C S+ AHS SV F GH Y LYF
Sbjct: 87 QDCISINAHSTSSVSQF--SWGHLVEVYYLYF 116
>08_01_0796 - 7696339-7696457,7696749-7696795,7696813-7697084
Length = 145
Score = 26.6 bits (56), Expect = 6.5
Identities = 14/54 (25%), Positives = 29/54 (53%)
Frame = +2
Query: 68 MLGVQSLLRTNRQILKNVLQQRNMSVIATPARNKISKAEVVVLGSLMVVGWSAV 229
++G +L R R+++ + Q + + + A + AE V +GSL V W+++
Sbjct: 83 VIGSSTLHRLKRKVIAVIFQYLSFGLDGSGATDLF--AEFVAIGSLFVFFWASI 134
>04_04_1694 - 35419278-35419565,35419744-35419861,35420404-35420490,
35420909-35420931,35421647-35421843,35421964-35422159,
35422382-35422481,35423288-35423374,35424053-35424282,
35424678-35424763,35425148-35425271,35425415-35428573,
35430014-35430019
Length = 1566
Score = 26.6 bits (56), Expect = 6.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 205 DGGGLVCCPSVGSRQHQT 258
DGG L+CC + S HQT
Sbjct: 1033 DGGELLCCDNCPSTYHQT 1050
>03_05_0883 + 28483429-28484385,28485090-28485398
Length = 421
Score = 26.6 bits (56), Expect = 6.5
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 79 PEPPQNQPTDPKECAPTEKHERYRY 153
P PP+ P P AP H RYR+
Sbjct: 397 PPPPRALPPVPMMLAPRGAHGRYRF 421
>03_05_0324 - 23121401-23121465,23121507-23122059
Length = 205
Score = 26.6 bits (56), Expect = 6.5
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1
Query: 88 PQNQPTDPKECAPTEKHERYRYT 156
P+ P K C P +KHE R T
Sbjct: 122 PEKDPNAAKSCPPDKKHEPTRIT 144
>11_04_0255 -
15422536-15422640,15422734-15422790,15422917-15423013,
15423155-15423222,15423299-15423344,15423467-15423621,
15423767-15423995,15424124-15424200,15425804-15425856,
15426082-15426139
Length = 314
Score = 26.2 bits (55), Expect = 8.6
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -1
Query: 233 LGQQTSPPPSNCPTQPLLLL 174
+G +TS S CP+QPLL+L
Sbjct: 278 VGVRTSHNNSGCPSQPLLVL 297
>01_03_0105 + 12604125-12604583
Length = 152
Score = 26.2 bits (55), Expect = 8.6
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +1
Query: 178 SRSGCVGQFDGGGLVCCP--SVGSRQHQTLQRQ 270
SR VG + GGG C P +V S QH+ Q
Sbjct: 39 SRCVAVGAYGGGGAGCAPCFAVFSHQHKLFYSQ 71
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,341,260
Number of Sequences: 37544
Number of extensions: 214118
Number of successful extensions: 670
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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