Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_A03
         (377 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK054885-1|BAB70821.1|  306|Homo sapiens protein ( Homo sapiens ...    29   3.8  
BC067266-1|AAH67266.1| 1461|Homo sapiens periaxin protein.             28   8.8  
AF321191-1|AAK19279.1| 1461|Homo sapiens L-periaxin protein.           28   8.8  
AF272900-1|AAF86274.1|  809|Homo sapiens cone photoreceptor cycl...    28   8.8  
AB046840-1|BAB13446.1| 1398|Homo sapiens KIAA1620 protein protein.     28   8.8  

>AK054885-1|BAB70821.1|  306|Homo sapiens protein ( Homo sapiens
           cDNA FLJ30323 fis, clone BRACE2007109, highly similar to
           Extensin-like protein NG5. ).
          Length = 306

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 79  PEPPQNQPTDPKECAPTEKHERYRY 153
           P+PP   P  P + AP+  H  + Y
Sbjct: 23  PQPPAEPPAPPPQAAPSSHHHHHHY 47


>BC067266-1|AAH67266.1| 1461|Homo sapiens periaxin protein.
          Length = 1461

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +1

Query: 130  EKHERYRYTR*K*DFKSRSGCVGQFDGGGLVCCPSVG 240
            EK  ++R+ R     K+RSG   Q +GG  V  PSVG
Sbjct: 1405 EKSPKFRFPRVSLSPKARSGSGDQEEGGLRVRLPSVG 1441


>AF321191-1|AAK19279.1| 1461|Homo sapiens L-periaxin protein.
          Length = 1461

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +1

Query: 130  EKHERYRYTR*K*DFKSRSGCVGQFDGGGLVCCPSVG 240
            EK  ++R+ R     K+RSG   Q +GG  V  PSVG
Sbjct: 1405 EKSPKFRFPRVSLSPKARSGSGDQEEGGLRVRLPSVG 1441


>AF272900-1|AAF86274.1|  809|Homo sapiens cone photoreceptor cyclic
           nucleotide-gated channel beta subunit protein.
          Length = 809

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = -3

Query: 207 IKLPNTTTSAFEILFLAGVAITLMFLCWSTFFRICRLVLRRLWTPNILVYFIFSIYSKAL 28
           IKLPN+  S  + L+L  + +  +   W+ +F   RLV       NI  + I  I    +
Sbjct: 204 IKLPNSIDSYTDRLYLLWLLLVTLAYNWNCWFIPLRLVFPYQTADNIHYWLIADIICDII 263

Query: 27  IVTD 16
            + D
Sbjct: 264 YLYD 267


>AB046840-1|BAB13446.1| 1398|Homo sapiens KIAA1620 protein protein.
          Length = 1398

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +1

Query: 130  EKHERYRYTR*K*DFKSRSGCVGQFDGGGLVCCPSVG 240
            EK  ++R+ R     K+RSG   Q +GG  V  PSVG
Sbjct: 1342 EKSPKFRFPRVSLSPKARSGSGDQEEGGLRVRLPSVG 1378


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,718,726
Number of Sequences: 237096
Number of extensions: 1297371
Number of successful extensions: 3465
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3457
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2536788584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)