Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_A03
         (377 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99282-1|CAB16532.1| 1037|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AC084158-15|AAK68556.1|  190|Caenorhabditis elegans Hypothetical...    28   1.9  
Z29443-11|CAK55173.1|  367|Caenorhabditis elegans Hypothetical p...    27   3.4  
AL032637-15|CAA21616.2|  370|Caenorhabditis elegans Hypothetical...    27   4.5  
AF026202-1|AAZ82858.1|  755|Caenorhabditis elegans Histone deace...    27   5.9  
U50300-5|AAC48103.2|  337|Caenorhabditis elegans Serpentine rece...    26   7.8  

>Z99282-1|CAB16532.1| 1037|Caenorhabditis elegans Hypothetical
           protein Y70C5A.2 protein.
          Length = 1037

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -3

Query: 168 LFLAGVAITLMFLCWSTFFRICRLVLRRLWTPNILVYFIFSIYSKALIVT 19
           LFL G+ +TL+F C+  F  IC L ++   + +  +  I  I   A I T
Sbjct: 214 LFLLGIQVTLLF-CFLLFLPICFLAIKAPGSESTSLTIILFIGHHATIST 262


>AC084158-15|AAK68556.1|  190|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.12 protein.
          Length = 190

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
 Frame = -1

Query: 329 HFNHNNIRELLILMWYVFIPCLCSV*C*REPT----LGQQTSPPPSNCPTQPLLL 177
           H    ++ ELL+  WYV + C  S      P+     G  TS PP N   +  LL
Sbjct: 36  HQQQESLEELLLWWWYVLLQCSSSSAGEIHPSEKSEKGGATSAPPKNTEMREKLL 90


>Z29443-11|CAK55173.1|  367|Caenorhabditis elegans Hypothetical
           protein T07C4.11 protein.
          Length = 367

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 176 KAEVVVLGSLMVVGWSAVPVWVLVN 250
           K E  +LG     GW+AV  WVL N
Sbjct: 25  KNEPFILGEWSTSGWTAVKDWVLPN 49


>AL032637-15|CAA21616.2|  370|Caenorhabditis elegans Hypothetical
           protein Y43F8C.16 protein.
          Length = 370

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -3

Query: 246 TRTHTGTADQPTTIKLPNTTTS 181
           T T TG+++ P+T  +P+TTTS
Sbjct: 285 TITSTGSSNPPSTSTVPSTTTS 306


>AF026202-1|AAZ82858.1|  755|Caenorhabditis elegans Histone
           deacetylase protein 4 protein.
          Length = 755

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 169 DFKSRSGCVGQFDGGGLVCCPSVGSRQHQTLQRQGIK 279
           D   R+G +G      L    S+GS Q+Q+L +Q I+
Sbjct: 258 DEGDRNGLIGSSSTSSLASNVSMGSHQYQSLLKQQIR 294


>U50300-5|AAC48103.2|  337|Caenorhabditis elegans Serpentine
           receptor, class t protein18 protein.
          Length = 337

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 377 FFFFFFYDSKLTVYLIHFNHNNIRELLILMWYVF 276
           F F FF+ +   VY ++ N   I ELLI++ + F
Sbjct: 263 FLFCFFHATSSVVY-VYMNFFEISELLIVIGHFF 295


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,165,603
Number of Sequences: 27780
Number of extensions: 193530
Number of successful extensions: 751
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)