Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_A03
(377 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF069739-1|AAC63272.2| 690|Apis mellifera translation initiatio... 25 0.30
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 2.1
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 22 2.1
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 2.1
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 22 2.1
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 22 2.1
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 2.8
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 2.8
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 2.8
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 2.8
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 2.8
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 2.8
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 2.8
AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter... 22 2.8
AB194707-1|BAD69622.1| 247|Apis mellifera heme oxygenase protein. 21 6.4
D79208-1|BAA11466.1| 567|Apis mellifera alpha-glucosidase protein. 20 8.4
AF498306-5|AAM19330.1| 456|Apis mellifera dopamine receptor typ... 20 8.4
AB253417-1|BAE86928.1| 567|Apis mellifera alpha-glucosidase pro... 20 8.4
>AF069739-1|AAC63272.2| 690|Apis mellifera translation initiation
factor 2 protein.
Length = 690
Score = 25.0 bits (52), Expect = 0.30
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Frame = +2
Query: 53 IKYTKMLGVQSLLRTNRQILKNVLQ------QRNMSVIATPARNKISKAEV 187
I+Y KML ++ L +R+I+ V + ++N + TPA N I K +V
Sbjct: 437 IEYKKMLKIKRLFGKDRKIMDMVREKIIEEKRKNKNKNLTPAVNIIVKGDV 487
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.2 bits (45), Expect = 2.1
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Frame = -3
Query: 102 RLVLRRLWTPNILVY-----FIFSIYSKALIVTDNQS 7
R+ +LW P+IL+Y Y +++VT N S
Sbjct: 62 RITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHNGS 98
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 22.2 bits (45), Expect = 2.1
Identities = 9/28 (32%), Positives = 11/28 (39%)
Frame = +1
Query: 70 VGCPEPPQNQPTDPKECAPTEKHERYRY 153
V C PP+ P KE + RY
Sbjct: 390 VACSPPPRQTPPSRKESGRRRRRRTPRY 417
Score = 20.6 bits (41), Expect = 6.4
Identities = 7/16 (43%), Positives = 9/16 (56%)
Frame = +1
Query: 73 GCPEPPQNQPTDPKEC 120
GCP +N P D + C
Sbjct: 129 GCPMNLENFPMDTQRC 144
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 22.2 bits (45), Expect = 2.1
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -3
Query: 111 RICRLVLRRLWTPNILVY 58
R R+ RLW P++L+Y
Sbjct: 96 RDLRIPPHRLWKPDVLMY 113
Score = 21.0 bits (42), Expect = 4.8
Identities = 7/14 (50%), Positives = 7/14 (50%)
Frame = -2
Query: 226 SRPAHHHQTAQHNH 185
S P HH T H H
Sbjct: 410 STPGPHHHTMGHGH 423
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 22.2 bits (45), Expect = 2.1
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +3
Query: 165 IRFQKQKWLCWAV*WWWAGLLSQCGFSS 248
I+F K+L + WW L CG SS
Sbjct: 512 IKFVPVKYLTYEYPWWSHVLGWLCGLSS 539
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 22.2 bits (45), Expect = 2.1
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +3
Query: 165 IRFQKQKWLCWAV*WWWAGLLSQCGFSS 248
I+F K+L + WW L CG SS
Sbjct: 565 IKFVPVKYLTYEYPWWSHVLGWLCGLSS 592
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 2.8
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -3
Query: 102 RLVLRRLWTPNILVY 58
R+ +LW P+IL+Y
Sbjct: 62 RITPNKLWKPDILMY 76
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 2.8
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -3
Query: 102 RLVLRRLWTPNILVY 58
R+ +LW P+IL+Y
Sbjct: 62 RITPNKLWKPDILMY 76
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 2.8
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -3
Query: 102 RLVLRRLWTPNILVY 58
R+ +LW P+IL+Y
Sbjct: 62 RITPNKLWKPDILMY 76
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 2.8
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -3
Query: 102 RLVLRRLWTPNILVY 58
R+ +LW P+IL+Y
Sbjct: 62 RITPNKLWKPDILMY 76
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 2.8
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -3
Query: 102 RLVLRRLWTPNILVY 58
R+ +LW P+IL+Y
Sbjct: 62 RITPNKLWKPDILMY 76
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 2.8
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -3
Query: 102 RLVLRRLWTPNILVY 58
R+ +LW P+IL+Y
Sbjct: 130 RITPNKLWKPDILMY 144
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 2.8
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -3
Query: 102 RLVLRRLWTPNILVY 58
R+ +LW P+IL+Y
Sbjct: 130 RITPNKLWKPDILMY 144
>AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter
transporter-1A protein.
Length = 203
Score = 21.8 bits (44), Expect = 2.8
Identities = 8/29 (27%), Positives = 17/29 (58%)
Frame = +3
Query: 189 LCWAV*WWWAGLLSQCGFSSTSNTTETRN 275
L WA+ +++ + S+ + S +N T+N
Sbjct: 81 LAWAIFYFFMSMRSELPWGSCNNYWNTKN 109
>AB194707-1|BAD69622.1| 247|Apis mellifera heme oxygenase protein.
Length = 247
Score = 20.6 bits (41), Expect = 6.4
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -1
Query: 347 LTVYLIHFNHNNIRELLILMWYVF 276
+T YLIH E ++L+ Y++
Sbjct: 104 VTKYLIHLKEIEDTEPILLIAYIY 127
>D79208-1|BAA11466.1| 567|Apis mellifera alpha-glucosidase protein.
Length = 567
Score = 20.2 bits (40), Expect = 8.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 237 GFSSTSNTTETRNKN 281
GFSS+SNT N+N
Sbjct: 429 GFSSSSNTWLRVNEN 443
>AF498306-5|AAM19330.1| 456|Apis mellifera dopamine receptor type
D2 protein.
Length = 456
Score = 20.2 bits (40), Expect = 8.4
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +3
Query: 186 WLCWAV*WWWAGLLSQC 236
WL + V W+G SQC
Sbjct: 348 WLPFFVVNLWSGFCSQC 364
>AB253417-1|BAE86928.1| 567|Apis mellifera alpha-glucosidase
protein.
Length = 567
Score = 20.2 bits (40), Expect = 8.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 237 GFSSTSNTTETRNKN 281
GFSS+SNT N+N
Sbjct: 429 GFSSSSNTWLRVNEN 443
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,918
Number of Sequences: 438
Number of extensions: 2415
Number of successful extensions: 20
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used: 9176370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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