Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_A02
         (395 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...   207   4e-55
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...   207   4e-55
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    45   4e-06
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos...    26   2.4  
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch...    25   5.6  
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    24   7.4  
SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24 famil...    24   7.4  
SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|ch...    24   9.8  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    24   9.8  
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo...    24   9.8  
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom...    24   9.8  

>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score =  207 bits (506), Expect = 4e-55
 Identities = 93/121 (76%), Positives = 107/121 (88%)
 Frame = +3

Query: 33  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 212
           MGKP G+  ARK  NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVEAK
Sbjct: 1   MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60

Query: 213 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 392
           QPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEVL++GFGRKG A GDIPGVRF
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRF 120

Query: 393 K 395
           K
Sbjct: 121 K 121


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  207 bits (506), Expect = 4e-55
 Identities = 93/121 (76%), Positives = 107/121 (88%)
 Frame = +3

Query: 33  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 212
           MGKP G+  ARK  NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVEAK
Sbjct: 1   MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60

Query: 213 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 392
           QPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEVL++GFGRKG A GDIPGVRF
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRF 120

Query: 393 K 395
           K
Sbjct: 121 K 121


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 45.2 bits (102), Expect = 4e-06
 Identities = 29/78 (37%), Positives = 46/78 (58%)
 Frame = +3

Query: 159 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLV 338
           G+   +G+      V+ K+PNSA+RK  RV+L   G+ VTA++P  G  ++ +E+  VL+
Sbjct: 47  GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL-STGRSVTAYIP--GIGHNAQEHAVVLL 103

Query: 339 AGFGRKGHAVGDIPGVRF 392
            G GR      D PGV++
Sbjct: 104 RG-GR----AQDCPGVQY 116


>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 15/61 (24%), Positives = 26/61 (42%)
 Frame = -1

Query: 209 GFNANFFEDDALSMRCTTEGVRLPSRTHVGFFEFLVGPSLLATMIHVLARRANTPRFTHY 30
           GF  +++ +     R   E +RLP     G  + +V    L T +  L++    P + H 
Sbjct: 350 GFKPSYYTNLNRIARYPIENIRLPITLVYGSNDNMVDIETLKTQLPPLSQCIQIPNYEHL 409

Query: 29  D 27
           D
Sbjct: 410 D 410


>SPBC56F2.12 |ilv5||acetohydroxyacid
           reductoisomerase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +3

Query: 288 PRDGCLNHIEENDEVLVAGFGRKGHAVG 371
           PR+  +++ + ND + + G+G +GH  G
Sbjct: 74  PREKLVDYFK-NDTLAIIGYGSQGHGQG 100


>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +3

Query: 96  WADKEFKKAHMGTRWKANPFGGASHAKGIV 185
           W D EF   H   ++   PF   +H K  V
Sbjct: 253 WFDIEFSACHKPIKFSTGPFSRYTHWKQTV 282


>SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 195

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 14/42 (33%), Positives = 16/42 (38%)
 Frame = -1

Query: 128 HVGFFEFLVGPSLLATMIHVLARRANTPRFTHYDSANTIGPR 3
           HV      +  S+L   IHV     N    T Y  A  IG R
Sbjct: 28  HVTILHVNLAKSMLCGFIHVSYTSPNNTSLTTYFEAEIIGNR 69


>SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 257

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 200 ANFFEDDALSMRCTTEGVRLPSRT 129
           +++FE + + + CT  G R PS+T
Sbjct: 51  SSYFESEKIKIACTVSGPR-PSKT 73


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 102 DKEFKKAHMGTRWKANPFGGASHAKGIVLEKV 197
           D+EF+   +   +K  PF    HA  +V+  V
Sbjct: 143 DREFRIGRLKFNFKPGPFNVKEHALIVVMSSV 174


>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 268 LPFLMSCTRTHLRMAEFGCLAST 200
           L  L+SC +T+   A FGC   T
Sbjct: 133 LSSLLSCMKTYRATALFGCSTDT 155


>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 209 GFNANFFEDDALSMRCTTEGVRLPSR 132
           G + NFFE+D  S+R  ++ +   +R
Sbjct: 11  GLSLNFFEEDGPSLRLNSDSLDFLAR 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,748,748
Number of Sequences: 5004
Number of extensions: 35575
Number of successful extensions: 87
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)