Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_A02
(395 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S... 228 6e-60
CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein. 228 6e-60
BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23 p... 228 6e-60
AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23 p... 82 7e-16
Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal p... 50 2e-06
CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein. 50 2e-06
BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal... 50 2e-06
BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal... 50 2e-06
BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal... 50 2e-06
AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12 p... 50 2e-06
X72012-1|CAA50891.1| 625|Homo sapiens endoglin protein. 30 3.2
DQ866809-1|ABI75346.1| 625|Homo sapiens endoglin (Osler-Rendu-W... 30 3.2
AL162586-6|CAI39765.1| 625|Homo sapiens endoglin (Osler-Rendu-W... 30 3.2
AL157935-2|CAI12605.1| 625|Homo sapiens endoglin (Osler-Rendu-W... 30 3.2
AY186778-1|AAO27434.1| 727|Homo sapiens polymerase protein. 29 7.4
M14123-4|AAA88033.1| 1361|Homo sapiens protein ( Human endogenou... 28 9.7
AF298587-1|AAK11553.1| 956|Homo sapiens polymerase protein. 28 9.7
AF164614-1|AAD51797.1| 1879|Homo sapiens Gag-Pro-Pol protein pro... 28 9.7
AF164613-1|AAD51796.1| 1755|Homo sapiens Gag-Pro-Pol protein pro... 28 9.7
AF164611-1|AAD51793.1| 2294|Homo sapiens Gag-Pro-Pol-Env protein... 28 9.7
AF074086-7|AAD21097.1| 956|Homo sapiens polymerase protein. 28 9.7
AF074086-3|AAF88167.1| 956|Homo sapiens polymerase protein. 28 9.7
>D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S28
homologue protein.
Length = 143
Score = 228 bits (557), Expect = 6e-60
Identities = 105/121 (86%), Positives = 113/121 (93%)
Frame = +3
Query: 33 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 212
MGK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 213 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 392
QPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120
Query: 393 K 395
K
Sbjct: 121 K 121
>CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein.
Length = 143
Score = 228 bits (557), Expect = 6e-60
Identities = 105/121 (86%), Positives = 113/121 (93%)
Frame = +3
Query: 33 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 212
MGK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 213 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 392
QPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120
Query: 393 K 395
K
Sbjct: 121 K 121
>BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23
protein.
Length = 143
Score = 228 bits (557), Expect = 6e-60
Identities = 105/121 (86%), Positives = 113/121 (93%)
Frame = +3
Query: 33 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 212
MGK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 213 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 392
QPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120
Query: 393 K 395
K
Sbjct: 121 K 121
>AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23
protein.
Length = 59
Score = 81.8 bits (193), Expect = 7e-16
Identities = 36/38 (94%), Positives = 36/38 (94%)
Frame = +3
Query: 282 FVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFK 395
FVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFK
Sbjct: 1 FVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFK 38
>Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 precursor protein.
Length = 138
Score = 50.4 bits (115), Expect = 2e-06
Identities = 33/83 (39%), Positives = 47/83 (56%)
Frame = +3
Query: 141 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 320
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 321 NDEVLVAGFGRKGHAVGDIPGVR 389
+ VLV G GR D+PGV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVK 122
>CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein.
Length = 138
Score = 50.4 bits (115), Expect = 2e-06
Identities = 33/83 (39%), Positives = 47/83 (56%)
Frame = +3
Query: 141 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 320
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 321 NDEVLVAGFGRKGHAVGDIPGVR 389
+ VLV G GR D+PGV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVK 122
>BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 50.4 bits (115), Expect = 2e-06
Identities = 33/83 (39%), Positives = 47/83 (56%)
Frame = +3
Query: 141 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 320
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 321 NDEVLVAGFGRKGHAVGDIPGVR 389
+ VLV G GR D+PGV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVK 122
>BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 50.4 bits (115), Expect = 2e-06
Identities = 33/83 (39%), Positives = 47/83 (56%)
Frame = +3
Query: 141 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 320
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 321 NDEVLVAGFGRKGHAVGDIPGVR 389
+ VLV G GR D+PGV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVK 122
>BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 50.4 bits (115), Expect = 2e-06
Identities = 33/83 (39%), Positives = 47/83 (56%)
Frame = +3
Query: 141 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 320
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 321 NDEVLVAGFGRKGHAVGDIPGVR 389
+ VLV G GR D+PGV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVK 122
>AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12
protein.
Length = 138
Score = 50.4 bits (115), Expect = 2e-06
Identities = 33/83 (39%), Positives = 47/83 (56%)
Frame = +3
Query: 141 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 320
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 321 NDEVLVAGFGRKGHAVGDIPGVR 389
+ VLV G GR D+PGV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVK 122
>X72012-1|CAA50891.1| 625|Homo sapiens endoglin protein.
Length = 625
Score = 29.9 bits (64), Expect = 3.2
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 164 CTTEGVRLPSRTHVGFFEFLVGPSLLATMIHVLARRANTPR 42
CT++G+ LP+ + F FL+G L A + ++ + PR
Sbjct: 582 CTSKGLVLPAVLGITFGAFLIGALLTAALWYIYSHTREYPR 622
>DQ866809-1|ABI75346.1| 625|Homo sapiens endoglin
(Osler-Rendu-Weber syndrome 1) protein.
Length = 625
Score = 29.9 bits (64), Expect = 3.2
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 164 CTTEGVRLPSRTHVGFFEFLVGPSLLATMIHVLARRANTPR 42
CT++G+ LP+ + F FL+G L A + ++ + PR
Sbjct: 582 CTSKGLVLPAVLGITFGAFLIGALLTAALWYIYSHTREYPR 622
>AL162586-6|CAI39765.1| 625|Homo sapiens endoglin
(Osler-Rendu-Weber syndrome 1) protein.
Length = 625
Score = 29.9 bits (64), Expect = 3.2
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 164 CTTEGVRLPSRTHVGFFEFLVGPSLLATMIHVLARRANTPR 42
CT++G+ LP+ + F FL+G L A + ++ + PR
Sbjct: 582 CTSKGLVLPAVLGITFGAFLIGALLTAALWYIYSHTREYPR 622
>AL157935-2|CAI12605.1| 625|Homo sapiens endoglin
(Osler-Rendu-Weber syndrome 1) protein.
Length = 625
Score = 29.9 bits (64), Expect = 3.2
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 164 CTTEGVRLPSRTHVGFFEFLVGPSLLATMIHVLARRANTPR 42
CT++G+ LP+ + F FL+G L A + ++ + PR
Sbjct: 582 CTSKGLVLPAVLGITFGAFLIGALLTAALWYIYSHTREYPR 622
>AY186778-1|AAO27434.1| 727|Homo sapiens polymerase protein.
Length = 727
Score = 28.7 bits (61), Expect = 7.4
Identities = 26/105 (24%), Positives = 38/105 (36%), Gaps = 1/105 (0%)
Frame = +3
Query: 42 PRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLE-KVGVEAKQP 218
P I R H N A++E KA +H L+ K V KQ
Sbjct: 421 PFYITHIRAHTNLPGPLTKANEEADLLVSSALIKAQELHALTHVNAAGLKNKFDVTWKQA 480
Query: 219 NSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGR 353
++ C + Q++ + PR C N + + D V FGR
Sbjct: 481 KDIVQHCTQCQVLHLPTQEAGVNPRGLCPNALWQMDVTHVPSFGR 525
>M14123-4|AAA88033.1| 1361|Homo sapiens protein ( Human endogenous
retrovirus HERV-K10. ).
Length = 1361
Score = 28.3 bits (60), Expect = 9.7
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = +3
Query: 141 KANPFGGASHAKGIVLE-KVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIE 317
KA +H L+ K V KQ ++ C + Q++ + PR C N +
Sbjct: 493 KAQELHALTHVNAAGLKNKFDVTWKQAKDIVQHCTQCQVLHLPTQEAGVNPRGLCPNALW 552
Query: 318 ENDEVLVAGFGR 353
+ D V FGR
Sbjct: 553 QMDVTHVPSFGR 564
>AF298587-1|AAK11553.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 28.3 bits (60), Expect = 9.7
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = +3
Query: 141 KANPFGGASHAKGIVLE-KVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIE 317
KA +H L+ K V KQ ++ C + Q++ + PR C N +
Sbjct: 591 KAQELHALTHVNAAGLKNKFDVTWKQAKDIVQHCTQCQVLHLPTQEAGVNPRGLCPNALW 650
Query: 318 ENDEVLVAGFGR 353
+ D V FGR
Sbjct: 651 QMDVTHVPSFGR 662
>AF164614-1|AAD51797.1| 1879|Homo sapiens Gag-Pro-Pol protein protein.
Length = 1879
Score = 28.3 bits (60), Expect = 9.7
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = +3
Query: 141 KANPFGGASHAKGIVLE-KVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIE 317
KA +H L+ K V KQ ++ C + Q++ + PR C N +
Sbjct: 1514 KAQELHALTHVNAAGLKNKFDVTWKQAKDIVQHCTQCQVLHLPTQEAGVNPRGLCPNALW 1573
Query: 318 ENDEVLVAGFGR 353
+ D V FGR
Sbjct: 1574 QMDVTHVPSFGR 1585
>AF164613-1|AAD51796.1| 1755|Homo sapiens Gag-Pro-Pol protein protein.
Length = 1755
Score = 28.3 bits (60), Expect = 9.7
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = +3
Query: 141 KANPFGGASHAKGIVLE-KVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIE 317
KA +H L+ K V KQ ++ C + Q++ + PR C N +
Sbjct: 1514 KAQELHALTHVNAAGLKNKFDVTWKQAKDIVQHCTQCQVLHLPTQEAGVNPRGLCPNALW 1573
Query: 318 ENDEVLVAGFGR 353
+ D V FGR
Sbjct: 1574 QMDVTHVPSFGR 1585
>AF164611-1|AAD51793.1| 2294|Homo sapiens Gag-Pro-Pol-Env protein
protein.
Length = 2294
Score = 28.3 bits (60), Expect = 9.7
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = +3
Query: 141 KANPFGGASHAKGIVLE-KVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIE 317
KA +H L+ K V KQ ++ C + Q++ + PR C N +
Sbjct: 1514 KAQELHALTHVNAAGLKNKFDVTWKQAKDIVQHCTQCQVLHLPTQEAGVNPRGLCPNALW 1573
Query: 318 ENDEVLVAGFGR 353
+ D V FGR
Sbjct: 1574 QMDVTHVPSFGR 1585
>AF074086-7|AAD21097.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 28.3 bits (60), Expect = 9.7
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = +3
Query: 141 KANPFGGASHAKGIVLE-KVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIE 317
KA +H L+ K V KQ ++ C + Q++ + PR C N +
Sbjct: 591 KAQELHALTHVNAAGLKNKFDVTWKQAKDIVQHCTQCQVLHLPTQEAGVNPRGLCPNALW 650
Query: 318 ENDEVLVAGFGR 353
+ D V FGR
Sbjct: 651 QMDVTHVPSFGR 662
>AF074086-3|AAF88167.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 28.3 bits (60), Expect = 9.7
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = +3
Query: 141 KANPFGGASHAKGIVLE-KVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIE 317
KA +H L+ K V KQ ++ C + Q++ + PR C N +
Sbjct: 591 KAQELHALTHVNAAGLKNKFDVTWKQAKDIVQHCTQCQVLHLPTQEAGVNPRGLCPNALW 650
Query: 318 ENDEVLVAGFGR 353
+ D V FGR
Sbjct: 651 QMDVTHVPSFGR 662
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,340,956
Number of Sequences: 237096
Number of extensions: 1487542
Number of successful extensions: 3779
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 3579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3763
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2813442310
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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