Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_A02
         (395 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...   229   4e-61
Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical pr...    51   3e-07
AF036693-4|AAK29786.1|  360|Caenorhabditis elegans Hypothetical ...    28   2.1  
Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical pr...    27   3.7  
Z81496-10|CAB04066.2|  324|Caenorhabditis elegans Hypothetical p...    26   8.5  
AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical ...    26   8.5  

>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score =  229 bits (561), Expect = 4e-61
 Identities = 102/121 (84%), Positives = 112/121 (92%)
 Frame = +3

Query: 33  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 212
           MGKP+G+ TARK   HR+EQRW DK +KKAH+GTRWK+NPFGGASHAKGIVLEK+GVEAK
Sbjct: 1   MGKPKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAK 60

Query: 213 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 392
           QPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN +EENDEVLV+GFGR GHAVGDIPGVRF
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRF 120

Query: 393 K 395
           K
Sbjct: 121 K 121


>Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical
           protein T03D8.2 protein.
          Length = 157

 Score = 50.8 bits (116), Expect = 3e-07
 Identities = 30/66 (45%), Positives = 43/66 (65%)
 Frame = +3

Query: 159 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLV 338
           G SH KGIVL+ V    K+PNS  RKC  V+L   G +V A++P  G  ++++E+ +VLV
Sbjct: 72  GYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL-STGAEVCAYIPNVG--HNLQEHSQVLV 128

Query: 339 AGFGRK 356
            G GR+
Sbjct: 129 KG-GRR 133


>AF036693-4|AAK29786.1|  360|Caenorhabditis elegans Hypothetical
           protein C49A9.6 protein.
          Length = 360

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 8/77 (10%)
 Frame = +3

Query: 30  VMGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFG--------GASHAKGIV 185
           V  K   +  + KH  H  +  + D  FKK   GTRW    +G        G  + +G +
Sbjct: 235 VDSKTESLFVSNKH--HLEQGHFFDGNFKKNADGTRWTCQNYGQPVEQLAEGGINQRGKI 292

Query: 186 LEKVGVEAKQPNSAIRK 236
              V +E  QP    RK
Sbjct: 293 FFTVKIENFQPARGNRK 309


>Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical
           protein T23D8.9a protein.
          Length = 811

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 276 TAFVPRDGCLNHIEEN 323
           T FVP+DG LN I+EN
Sbjct: 653 TPFVPKDGVLNVIDEN 668


>Z81496-10|CAB04066.2|  324|Caenorhabditis elegans Hypothetical
           protein F09C6.7 protein.
          Length = 324

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -2

Query: 355 LRPNPATNTSSFSSMWLRQPSRGTNAVTFLPFLMSCTRTHL 233
           L+P+ + NTSS +   LR   +G N    LP L     T L
Sbjct: 216 LKPHLSPNTSSATRAMLRTLIKGLNYQILLPLLSYIPNTSL 256


>AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical
           protein Y106G6D.7 protein.
          Length = 948

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 77  SSSRAAMGRQGIQKSPHGYEMEGEPLRWCI 166
           S SR+   R+   +SP   E   +P RWC+
Sbjct: 579 SRSRSPPRRRRRSRSPRRREEHTDPTRWCV 608


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,989,894
Number of Sequences: 27780
Number of extensions: 214778
Number of successful extensions: 576
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)