Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_A01
         (289 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    35   0.002
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    30   0.077
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|...    28   0.23 
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|...    28   0.23 
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   1.7  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    25   2.2  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    25   2.2  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    24   3.8  
SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces ...    24   5.0  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    24   5.0  
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    23   6.7  
SPAC4A8.04 |isp6|prb1|vacuolar serine protease Isp6|Schizosaccha...    23   8.8  
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    23   8.8  

>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 35.1 bits (77), Expect = 0.002
 Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = +2

Query: 8   AAVAVHCVAGLGRAPVMVAIALI-ELGMKYEEAVETIRDQRRG-AINAKQLSYLEKY 172
           A V VHC AG+ R+  +VA  L+ E     EEA+  I ++R G + NA  L  L  Y
Sbjct: 125 AKVLVHCFAGISRSVTLVAAYLMKENNWNTEEALSHINERRSGISPNANFLRQLRVY 181


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 29.9 bits (64), Expect = 0.077
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +2

Query: 5   EAAVAVHCVAGLGRAPVMVAIALI-ELGMKYEEAVETIRDQRRGAINAKQLSYL 163
           +  +AVHC AGLGR   ++   LI +      E +  +R  R G +   Q  +L
Sbjct: 279 DGVIAVHCKAGLGRTGCLIGAYLIYKHCFTANEVIAYMRIMRPGMVVGPQQHWL 332


>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 393

 Score = 28.3 bits (60), Expect = 0.23
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 151 LFSVDRATTLISYGLDSLLVLHAEFYERDGDHDGRPAEP 35
           LF+ D +TT   YG DSL + H E +   G  D     P
Sbjct: 63  LFNTDESTTPPDYGEDSLSITHRENHS-SGTADNSSTSP 100


>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 368

 Score = 28.3 bits (60), Expect = 0.23
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 151 LFSVDRATTLISYGLDSLLVLHAEFYERDGDHDGRPAEP 35
           LF+ D +TT   YG DSL + H E +   G  D     P
Sbjct: 63  LFNTDESTTPPDYGEDSLSITHRENHS-SGTADNSSTSP 100


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -1

Query: 253  LSTRHATDLLHATVVLTPVLLQTRLRPVLFQVRELFSVDRATTL 122
            L+ + A D   AT + + +LL+T  +  L+Q   LFS+D   +L
Sbjct: 3860 LTDQDAEDCYPATPIQSGLLLETMNQKNLYQNDVLFSLDAEISL 3903


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 80  LGMKYEEAVETIRDQRRGAI--NAKQLSYLEKYRPKSRLKKNGSKNN 214
           L MK     +T+  Q    I  + K + YLE+   K +L+KNG + +
Sbjct: 26  LSMKRLTQNQTVHQQLHSNIEESKKSIIYLEERLEKLKLRKNGVRKS 72


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 161 LEKYRPKSRLKKNGSKNNC 217
           + K+ PK +LKKN S ++C
Sbjct: 489 VSKWNPKLKLKKNDSLHHC 507


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 2   HEAAVAVHCVAGLGRAPVMVAI 67
           ++  + VHC AG+GR    +A+
Sbjct: 622 NDGPMFVHCSAGVGRTGTFIAV 643


>SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 400

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 8   AAVAVHCVAGLGRAPVMVAIALIELGMKYEEAVETIRD 121
           + + +  + G   A ++ A A  E+ ++  E +ETIRD
Sbjct: 272 STINIGTIEGGAAANILAAEAKAEVFIRVAEDIETIRD 309


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 208  LTPVLLQTRLRPVLFQVRE 152
            L+  LLQT LRP+L+ + +
Sbjct: 1382 LSKELLQTTLRPILYNISD 1400


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = +2

Query: 92  YEEAVET----IRDQRRGAINAKQLSYLEKYRPKSRLKKNGSKNN 214
           Y +AVET    +RD R+    +   S+ ++ R +    K G KNN
Sbjct: 408 YRQAVETSIAGVRDGRKNYSASHIKSFQDQRRREEFANKMGIKNN 452


>SPAC4A8.04 |isp6|prb1|vacuolar serine protease
           Isp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 171 YFSKYESCLALIAP 130
           YFS Y SC+ + AP
Sbjct: 374 YFSNYGSCVDIFAP 387


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +1

Query: 91  VRGGCRDHTRSTSWRDQR 144
           +R  C  H R   WRD R
Sbjct: 234 MRALCTSHPRGIHWRDSR 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 875,146
Number of Sequences: 5004
Number of extensions: 11908
Number of successful extensions: 45
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 67723590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)